Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0302 ATGGTTAAGAGAGAACACAAGATCCAGGAGGCGGCGTCGAGGGGAAAACACTGCATATCAGATGGGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGATCATGGGTTTCAGAGATTAGAGCTCCTAACCAGAAGACAAGAATATGGCTGGGCTCTTATTCAACTCCTGAGGCTGCAGCCAGAGCCTATGATGCTGCACTTCTGTGCCTGAGAGGCTCCTCTGCAAATCTCAATTTCCCTCCTTCTTCTTCTTCTTCCACGCACTTCAATATTCCTCAAGACACTCTCCTGTCGCCTAAATCAATCCAAAGAGTAGCTGCAGCTGCTGCGAGTGCTTCTGTTGATAATGCCACCATCCCTCCTCCTCCTATTGCTTCGGCTTCTTCCTCATCAGTCTCATCTTCATCAATGGTTTCCTCTCCCTCTGATCTAGTCGATGATGATGCTTCGTTAATCTCATCCTTTGAGGCCTTCTCTGGCTATGATCACCTCAATGAACCAATGGCTGTGATGGAACCTTGGTACGGCCTTGAAGGGCTGCAATCCCCTAAATATGGTGATCAAATGCTCACTGGTTCTTTTTTTGATGACTTTTATTCTCACCAGCTTCTCGACGATCTCTACGAAGAAAGCAACATCAGTTTCTCTTTAGTTGCACGACAAGATGCCAGAGAACCGTTGTTGATCTCAGATACAGAGATAAGAGGGAACAGTTGTGCAATGTGGAAACTTGAAGTTATTGGAAAGTGCGTCTTTTGTATGGCATTGTCTGCTCTCCTTCATGCCAAAAGAACGTGGGGTTGTGTTCCGTTGTTTCGACTTGAGTGCCTCAAGGCCCAAAAAAATGGGCCCAGAGCATTAGGACGTCGATGGGCCTTATATTCTGGAAGTCGCGTTGACCAGCCTGTCAACAGCAACCATAAGGATCTTTTCGGAGCTCCGATTTCTGTCAAACTCTCTGGCAGTCGGCACTTCTGCCCTTCTCGTCTTCAAAGCCAATCACTGACTCGTCTCCTATCAGTCGACTTGGAGTTCTACCCCTGGCCTCGAAACGCCTCACCTTTTGGTGGTCATGGGTTATTCAAAGGAACAGCTGCTTGTCCGCTTACAGGCATTGTTGAGCTTCAGATTGAATTTTCCAAGTATGAACATCCAGTTGTTTTGACAGTTGAGGCTCAGTTTTCCAATTCTGCGTCTGTTTTACCGCAGGCCAAATATGTTGGAAACAAGGGGGGAGGGCTAAGCAAAAATTTATTCTTAAAGGACAAGAAACAAAGGTTTTATATTGTTTCTGCTCTAGCAGATACCAAAGTAGATTTGAAAGGTTTGGGGAAAGGAGGCCTGAGGATGGCGCCTGAAGAGGCTTTAGGTGAAATACTTAAGGTGCCCTTGGGTTGCGTTACTCCATTTGCGGTAGTGAATGAATCAGCACGTGATGTCTCTCTGTTATTGGATCAAGGGTTCAAGGCGCAGCAGCACTGCTTCTTCCATCCTCTATCAAATGACATGTCCATATCTCTAAATGCTCATGGTCTTGATAAATTTCTTAAATCAATAGGAAGAGATCCCTCGTATGCTGATTTGGAGGCCAATCCAACTGTGGGAAAAGATCAACCCCCTGATCTGGCTGCACTAGTTCCATCTGGTTCAATAGTTGTTCCAGGTCAACCTGAAAAACAACCTTCTCCACAAGTTCGTATAGATAAAAACCATGTTTCTGCTGATAGTGAACCCACTGTGAGTTTAGCAAAAGGTTTCAAGCCATCTGTTGGTGAGAAGAATACCAAGGGAAAACCAGTCGACACTGTTCATTCTCAAAGCTCCTTTGCTGATGTTGGGCAATTTGTCGAAGAGATAATGCACAAGGCTTCAGAATTATTGCTTTCAGAGATCAAGGAAGAAACCATAAAGCAACACGGACAGCAGCTGGCTAATGTGGTATCTGACAATCTACGGAAATGTCTCAGCTCTGATTTGAAGAACCTTGCTGTGATGTTCAAGAACACCGCTTACACAGAAGGGTTCCGTGCGGGCACTCTCCATCAGCCTAAACGCTCGTGA 2067 0.4572 MVKREHKIQEAASRGKHCISDGKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLRGSSANLNFPPSSSSSTHFNIPQDTLLSPKSIQRVAAAAASASVDNATIPPPPIASASSSSVSSSSMVSSPSDLVDDDASLISSFEAFSGYDHLNEPMAVMEPWYGLEGLQSPKYGDQMLTGSFFDDFYSHQLLDDLYEESNISFSLVARQDAREPLLISDTEIRGNSCAMWKLEVIGKCVFCMALSALLHAKRTWGCVPLFRLECLKAQKNGPRALGRRWALYSGSRVDQPVNSNHKDLFGAPISVKLSGSRHFCPSRLQSQSLTRLLSVDLEFYPWPRNASPFGGHGLFKGTAACPLTGIVELQIEFSKYEHPVVLTVEAQFSNSASVLPQAKYVGNKGGGLSKNLFLKDKKQRFYIVSALADTKVDLKGLGKGGLRMAPEEALGEILKVPLGCVTPFAVVNESARDVSLLLDQGFKAQQHCFFHPLSNDMSISLNAHGLDKFLKSIGRDPSYADLEANPTVGKDQPPDLAALVPSGSIVVPGQPEKQPSPQVRIDKNHVSADSEPTVSLAKGFKPSVGEKNTKGKPVDTVHSQSSFADVGQFVEEIMHKASELLLSEIKEETIKQHGQQLANVVSDNLRKCLSSDLKNLAVMFKNTAYTEGFRAGTLHQPKRS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0302 688 CDD PrdX_deacylase 376 525 - -
Lele28g0302 688 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Lele28g0302 688 FunFam ethylene-responsive transcription factor ERF014-like 24 84 - -
Lele28g0302 688 FunFam Putative prolyl-tRNA synthetase 368 535 - -
Lele28g0302 688 CDD AP2 24 84 IPR001471 GO:0003700|GO:0006355
Lele28g0302 688 Gene3D - 374 537 IPR036754 GO:0002161
Lele28g0302 688 PANTHER YBAK DOMAIN-CONTAINING PROTEIN 375 687 IPR040285 -
Lele28g0302 688 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Lele28g0302 688 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Lele28g0302 688 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Lele28g0302 688 Pfam Aminoacyl-tRNA editing domain 406 515 IPR007214 GO:0002161
Lele28g0302 688 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Lele28g0302 688 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Lele28g0302 688 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Lele28g0302 688 SUPERFAMILY YbaK/ProRS associated domain 376 530 IPR036754 GO:0002161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0302 Lele-ChrLele28 1785338 1793618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0302 26 167 AP2-EREBP Transcription Factor Family AT1G21910 58.389 3.10e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele28g0302 tRNA_edit 8.9e-20 No_clan