Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0278 ATGACGGATAAGTCATTAACGCTGACAATGAAGATGGAGATGAAATCGGATGTTGAGGATCGCATTAAGCTGCAGAAGGAAGAAGATCTGCATAATTTCCATGTCTTAGCCGTCGACGATAGTCTTATCGACCGCAAACTTCTCGAGAAGCTCCTTCAGGTGTCTTCTTGTAAAGTGACGAGTGTGGACTCCGGCCATAAGGCTTTGAAATATCTTGGTCTTGTTGACGATCTTGATAATGCTTCTTCAACTTCTTCAGAATCATCATCATCTTCCCCCCAGTCACCGCAAGAAGAGGCAATGAAAGTGAATTTGATCATGACGGACTACTGCATGCCAGGGATGAGTGGCTATGATTTACTTAAACGAGTCAAGGGATCTTCTTGGAAACACGTACCGGTGGTGATCATGTCATCAGAGAATGTACCTTCCAGAATCAGCATGTGCTTGGAAGGAGGAGCAGAGGAGTTTCTACTGAAGCCACTCAAGTTATCAGACGTGAAGAAGCTTGAGGCGTACCTTGGGAAATCCGTGGATAAGAATGAGAATAATTCATGGGATGAACAAGAATCTGGTAACAGTGATGGAGCAACCGACAGTGACTGCAATTCCAGCAGTAATATCAACACTTGCATCGCCAAAAGGAAGGCCATGTCTCCCCAACCTTCTGACAGATCCAGACCCAAATTCAAAGGCTTGACGGTCGTCTAA 711 0.4501 MTDKSLTLTMKMEMKSDVEDRIKLQKEEDLHNFHVLAVDDSLIDRKLLEKLLQVSSCKVTSVDSGHKALKYLGLVDDLDNASSTSSESSSSSPQSPQEEAMKVNLIMTDYCMPGMSGYDLLKRVKGSSWKHVPVVIMSSENVPSRISMCLEGGAEEFLLKPLKLSDVKKLEAYLGKSVDKNENNSWDEQESGNSDGATDSDCNSSSNINTCIAKRKAMSPQPSDRSRPKFKGLTVV 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0278 236 SUPERFAMILY CheY-like 31 169 IPR011006 -
Lele28g0278 236 Gene3D - 34 209 - -
Lele28g0278 236 ProSiteProfiles Response regulatory domain profile. 34 175 IPR001789 GO:0000160
Lele28g0278 236 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 191 IPR045279 GO:0009736
Lele28g0278 236 SMART REC_2 33 171 IPR001789 GO:0000160
Lele28g0278 236 CDD REC_typeA_ARR 35 170 - -
Lele28g0278 236 MobiDBLite consensus disorder prediction 187 216 - -
Lele28g0278 236 MobiDBLite consensus disorder prediction 180 236 - -
Lele28g0278 236 Pfam Response regulator receiver domain 35 168 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0278 Lele-ChrLele28 1657030 1661049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0278 33 233 Response Regulator Gene Family AT3G57040 47.577 1.17e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele28g0278 Response_reg 1.1e-16 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0259 25 1534257 1536276 Lele28g0278 28 1657030 1661049 hybridization
Lele26g0269 26 1588862 1590848 Lele28g0278 28 1657030 1661049 hybridization