Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0266 ATGGAAGATGTAAGCAATCGTATAGCACCGGCACCTAATGTTGATGATGGCTTCTCCAGTCCCAAGAAACCCTGGTGGAGGGATTTACTATCTTACGTAGGTCCTGGTTTTCTTGTGTCCATGGCTTACCTCGATCCTGGAAACTTGGAAACTGATATGCAAGCTGGAGCAAACCACAGATATGAGCTGCTATGGGTGATACTTATTGGGCTATTTTTTGCTCTCATTATTCAGTCATTGGCTGCAAACCTTGGCGTAACCACCGGGAAGCACCTTTCAGAATTATGTAGGGTGGAGTACCCATCGCTAGTGAAGTACTGCTTATGGTTGCTGGCTGAGATTTCCGTCATAGCTGCAGATATAGCCGAAGTTGTAGGCACAGCCTTTGCGCTCAACATACTGTTCCACATCCCACTATGGGCAGGAGTTCTCTTGACTGGCTTCTCCACTCTTTTGCTTCTTGGCCTCCAGAGATTTGGAGTATTCCATTTACCTTTCTTCTTTGAATCAAGAAATTCATTGGACATTTGGTTCACTTTTCTTAATTCCTGTCGAAGTTACTTGCATTTTAAATTACTTCTGGATGAGCAGGCTAGGAAGCTGGAAGTGCTGATATCAGCTCTAGTATTTTTAATGGCGGGATGCTTCTTTGTGGAGATGAGCTATGTAAAACCACCAGCTTCTGATGTATTGAAGGGAATGTTTGTCCCTAGACTTGATGGTCATGAAGCCACTGCTGACGCCATTGCCCTTTTCGGAGCACTCATCATGCCGCACAACCTCTTTCTCCATTCTGCTCTTGTTCTCTCTAGAAAAGTACCCACCTCTGTCCGTGGCATCAATGATGCATGCAGATACTTCCTAGTAGAAAGTGGGTTTGCTCTGTTTGTAGCATTTCTAATAAACGTAGCAGTAGTTTCAGTATCAGGCACAGTATGCTCAGCAAATAATCTTTCAGCTCAAGATACCGAAAGATGCGACGATCTCTCCCTCGCTTCTGCCTCTTTTCTTCTCAAGAATGTGTTGGGAAGGTCAAGTTCAACAGTTTATGCCATAGCACTTCTGGCCTCTGGACAAAGCTCTACGATCACTGGCACATATGCGGGGCAGTACATCATGCAGGGATTCTTGGATTTGAGGATGAAAAAATGGATGCGGAATTTGATGACTAGGTGTGTTGCCATAGTACCTAGTCTTGCTGTTGCTATTATTAGCGGATCTTCGGGTGCAAGCCGCCTTATTATCATTGCCTCGATGATACTTTCATTTGAGCTTCCATTTGCTTTGATTCCACTGCTCAAGTTTAGCAGCAGCAGCCCCAAAATGGGGCCTCACAAGAATTCTACAATTATCATTGTGATTTCATGGATCCTAGGCTTGGGAATCATCGGCATCAACGTGTACTACCTAAGCACAGGTTTTGTGGGCTGGTTAATTCACAGCAGTCTCCCAAAAGTGGCAAACATATTCATCGGGATCATAGTATTCCCTCTCATGGCCATTTATGTTGTTTCTGTTATCTACCTCACCTTCAGAAAAGACACTGTCAATACATTCATAGAGACTCAGAACGACTCTCTAGTGCCAACCCACATGGAAAATGGCCTCGTTAATGCTAACGATCAATTGGAATTGAGTCCCATTCCTTTTAGACAAGATTTAAGGGATATCCCACTTCCAGATTAA 1686 0.4407 MEDVSNRIAPAPNVDDGFSSPKKPWWRDLLSYVGPGFLVSMAYLDPGNLETDMQAGANHRYELLWVILIGLFFALIIQSLAANLGVTTGKHLSELCRVEYPSLVKYCLWLLAEISVIAADIAEVVGTAFALNILFHIPLWAGVLLTGFSTLLLLGLQRFGVFHLPFFFESRNSLDIWFTFLNSCRSYLHFKLLLDEQARKLEVLISALVFLMAGCFFVEMSYVKPPASDVLKGMFVPRLDGHEATADAIALFGALIMPHNLFLHSALVLSRKVPTSVRGINDACRYFLVESGFALFVAFLINVAVVSVSGTVCSANNLSAQDTERCDDLSLASASFLLKNVLGRSSSTVYAIALLASGQSSTITGTYAGQYIMQGFLDLRMKKWMRNLMTRCVAIVPSLAVAIISGSSGASRLIIIASMILSFELPFALIPLLKFSSSSPKMGPHKNSTIIIVISWILGLGIIGINVYYLSTGFVGWLIHSSLPKVANIFIGIIVFPLMAIYVVSVIYLTFRKDTVNTFIETQNDSLVPTHMENGLVNANDQLELSPIPFRQDLRDIPLPD 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0266 561 PRINTS Natural resistance-associated macrophage protein signature 108 134 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele28g0266 561 PRINTS Natural resistance-associated macrophage protein signature 136 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele28g0266 561 PRINTS Natural resistance-associated macrophage protein signature 418 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele28g0266 561 PRINTS Natural resistance-associated macrophage protein signature 386 403 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele28g0266 561 PRINTS Natural resistance-associated macrophage protein signature 358 377 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele28g0266 561 Hamap Divalent metal cation transporter MntH [mntH]. 13 474 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele28g0266 561 Pfam Natural resistance-associated macrophage protein 50 161 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele28g0266 561 Pfam Natural resistance-associated macrophage protein 192 448 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele28g0266 561 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 21 517 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele28g0266 561 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 27 440 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0266 Lele-ChrLele28 1573670 1576455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0266 5 561 Inorganic Solute Cotransporters AT1G15960 54.448 0.0 593