Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0262 ATGGTGGCATGGCTCTGCACGTGCCATACGGCATACTCCGTCGACATGAGTCTGCCCACCTCTCCGGCGATCCGGGTACTGTCACCTTCCCATCTCTGTTTCTTTAAGCCTTCCTTGTCCTCAGACAGTGGCAGAGTCTTCGGTTATGGTTTGGGGTTCGGGTTCGAGTGGCAGACGAAAAAGGGAAGGCTAAGGCGAAGGCTCAAGTTCGTTGTTAACGCAGAGCTTTCGAGGTCGTTGTCCTTGAATTTCGGGTTGGACTCTCAGAATGTGAATTCCTTCCAATCCCATGACCCATCACAGCTGCCTTGGATTGGTCCAATTCCAGGTGATATTGCTGAAATTGAGGCATATTGTAGGATCTTTAGGAGCGCTGAAAGGCTTCACTCTGCATTAATGGATGCCTTGTGCAATCCATTTACTGGTGAATGCAGTGTCTCATATGACGTCCCATCAGATGAGAAACCACAACTTGAAGATAAAATAGTCTCTGTCCTGGGATGTATGGTATCTCTTATGAATAAAGGTAGGGACGATATTCTTTCTGGAAGATCCTCAATCATGAATTCCTTTCGCACTGTACATATTAGCACAATGGAGGATAATCTCCCCCCACTTGCCATATTTAGGAGTGAGATGAAAAGGTGTTGTGAGAGCTTGCATGTAGCTCTTGAGAACTATTTGATATCTGATGATGATCGGAGCATAAATGTGTGGAGAAAACTTCAGAGACTGAAGAATGTCTGCTATGATTCAGGTTTTCCTCGTAAAGAGCATTATCCTTGCCATACTTTATTTGCAAATTGGAGTCCGGTTTATTTTTCAACTTCTACAGAGAACACGGGATCTAAAGATTCTGAGGCAGTTTTTTGGACTGGAGGCCAGGTTACAGAAGAAGGCTTGAAATGGTTAATGGATAAAGGATATAAAACTATAATAGATCTCAGAGCAGAAACTGTAAAAGACAACTTCTATCAAGCAGCCATTCATGATGTTATTGCCTCTGGGAAAATTGAATTGGTCAAAATCCCAGTTGAAGTTAGGACCGCACCTTCAATGGAACAGGTTGTGAGGTTTGCATCTTATGTTTCTGATGGCACCAAAAGGCCCATCTATCTTCACAGCAAGGAAGGAGTTTGGAGAACATCTGCCATGGTTTCCAGGTGGAGGCAGTACATTACTCGCTCTGCATCACAGTTAGTTTCTAATCAAGTGGTTACCTCCAATGACATGGTTTCTTCCTATACAAAGGGATCCAGAAACCCTCAGGATTCTTCGATGGCTTCAAAGGGATCCTTCCTAGAAAAGGATACCAGTTCTTTGCAAGAGAATCTGGGTGCAGTTCGTGGTTCTGTTGGAACATCATATAAAAGTGCCTCTCCAAAGAAGGATAACAAAGAGACACCAAGTAATGGGTCTTTCAATGAATATATTTCTGAAGATAAGACAATATCAGAAAACCTTCCTACTTCTAATGGGGCAGGATCTTTTCCAAGTTTATCCCAAGTGGCAAACCCTTTAAAAGCTCAAGTTCCTCCTCGTGATATCTTTTCCAAAAGGGAATTGTCCAACTTTATTGGAAATAGGAAGATCTCACCACCTTCTTATTTCAGATATCAAATTAGAGGAATGGAAACATTAGAACATTCAAGAAACATGCATACGGTTAGGTTTCAGGGAGACATGATGGTTAGCAATGTTGATAATCCTTTGCCCAAACTTGTGGACTCAGGAAGATCCAATGGGTCTGCTTATTTGGATTATCCTTCTGGAGGGGCAGAAGTTATGATTGATGGGGATACAAACTTAGTGGCTGGAAGTACTTCTATTTCTGTTCAGACAACAGCAAATGGATCTAGTGATAGGAAAACATATCCCATGTTTAAAACCAATGTCTCTGCCACTATGAGCACAGGTAGTGATCACGTCACTACTAAATCTCTGAAGGTTGGAGACAGCTTTACTGAAAGTAGGCTAGCCTTGGGTGAAGATTCAGAACCCATTGAGGGGAATATGTGTGCAACTTCAACAGGTGTTGTTAGGGTGCAGTCCAGGAAGAAGGCAGAAATGTTCTTAGTACGAACAGATGGTTACTCGTGTACTAGAGAAAAGGTGACTGAATCTTCTATGGCTTTCACTCACCCTAGCACCCAGCAGCAGATGCTTATGTGGAAATCTGCACCAAAAACTGTATTATTGTTGAAAAAACTAGGGGAACAATTGGTGGAAGAAGCAAAAGAGGTGGCCTCTTTCTTATATCACCAAGAGAAAATGAATGTTGTTGTGGAACCTGATGTGCATGATGCATTTGCTAGAATCCCAGGATTTGGATTTGTCCAGACTTTTTATAGTCAAGATACCAGTGATCTGCATGAGAAAGTAGACTTTGTGGCGTGCTTGGGGGGAGATGGGGTTATACTGCACTCTTCAAATCTATTTAGAGGAGCTGTTCCCCCTGTTGTTTCATTTAACCTTGGCTCTCTTGGTTTTCTGACGTCTCATAATTTTGATGACTACAAGCAGGACTTACGGCAAGTTATTCATGGAAATACTACACGAGATGGTGTGTATATTACTCTCAGAATGCGTCTCCGATGTGAAATTTTTCGCAAGGGTAAAGCTGTGTCAGGGAAAGTATTTGATGTTCTTAATGAGGTTGTCATTGACCGCGGTTCTAACCCATACCTTTCAAAAATTGAATGCTATGAGCATGATAGACTTATAACCAAGGTACAAGGTGATGGAGTCATTGTGGCCACCCCAACAGGAAGTACCGCCTATTCTACAGCTGCTGGAGGTTCTATGGTCCATCCAAATGTACCCTGCATGTTGTTTACACCTATATGTCCACATTCACTTTCATTTAGACCAGTTATTCTTCCGGATTCTGCTCGACTTGAATTAAAGATTCCAGAAGATGCGAGAAGTAATGCATGGGTTTCATTTGATGGGAAGAGAAGGCAGCAACTTTCAAGAGGAGATTCGGTCTGTATATATATGAGTCAGCATCCGCTTCCAACTGTTAACAAGTTTGACCAAACAGGGGACTGGTTTCATAGCTTGATTCGATGCCTAAATTGGAACGAAAGGCTTGATCAAAAGGCCCTGTAA 3111 0.424 MVAWLCTCHTAYSVDMSLPTSPAIRVLSPSHLCFFKPSLSSDSGRVFGYGLGFGFEWQTKKGRLRRRLKFVVNAELSRSLSLNFGLDSQNVNSFQSHDPSQLPWIGPIPGDIAEIEAYCRIFRSAERLHSALMDALCNPFTGECSVSYDVPSDEKPQLEDKIVSVLGCMVSLMNKGRDDILSGRSSIMNSFRTVHISTMEDNLPPLAIFRSEMKRCCESLHVALENYLISDDDRSINVWRKLQRLKNVCYDSGFPRKEHYPCHTLFANWSPVYFSTSTENTGSKDSEAVFWTGGQVTEEGLKWLMDKGYKTIIDLRAETVKDNFYQAAIHDVIASGKIELVKIPVEVRTAPSMEQVVRFASYVSDGTKRPIYLHSKEGVWRTSAMVSRWRQYITRSASQLVSNQVVTSNDMVSSYTKGSRNPQDSSMASKGSFLEKDTSSLQENLGAVRGSVGTSYKSASPKKDNKETPSNGSFNEYISEDKTISENLPTSNGAGSFPSLSQVANPLKAQVPPRDIFSKRELSNFIGNRKISPPSYFRYQIRGMETLEHSRNMHTVRFQGDMMVSNVDNPLPKLVDSGRSNGSAYLDYPSGGAEVMIDGDTNLVAGSTSISVQTTANGSSDRKTYPMFKTNVSATMSTGSDHVTTKSLKVGDSFTESRLALGEDSEPIEGNMCATSTGVVRVQSRKKAEMFLVRTDGYSCTREKVTESSMAFTHPSTQQQMLMWKSAPKTVLLLKKLGEQLVEEAKEVASFLYHQEKMNVVVEPDVHDAFARIPGFGFVQTFYSQDTSDLHEKVDFVACLGGDGVILHSSNLFRGAVPPVVSFNLGSLGFLTSHNFDDYKQDLRQVIHGNTTRDGVYITLRMRLRCEIFRKGKAVSGKVFDVLNEVVIDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPEDARSNAWVSFDGKRRQQLSRGDSVCIYMSQHPLPTVNKFDQTGDWFHSLIRCLNWNERLDQKAL 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0262 1036 MobiDBLite consensus disorder prediction 450 476 - -
Lele28g0262 1036 FunFam NAD kinase 2 chloroplastic 282 416 - -
Lele28g0262 1036 FunFam NAD kinase 2, chloroplastic 863 1003 - -
Lele28g0262 1036 Pfam ATP-NAD kinase C-terminal domain 883 1009 - -
Lele28g0262 1036 Gene3D - 863 1003 IPR017437 GO:0003951|GO:0019674
Lele28g0262 1036 Gene3D Protein tyrosine phosphatase superfamily 283 417 IPR029021 -
Lele28g0262 1036 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 290 395 IPR029021 -
Lele28g0262 1036 MobiDBLite consensus disorder prediction 412 433 - -
Lele28g0262 1036 PANTHER NAD KINASE 334 1036 - -
Lele28g0262 1036 FunFam NAD kinase 2, chloroplastic 718 885 - -
Lele28g0262 1036 Hamap NAD kinase [nadK]. 729 1027 IPR002504 GO:0003951|GO:0006741
Lele28g0262 1036 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 731 1031 IPR016064 -
Lele28g0262 1036 Pfam ATP-NAD kinase N-terminal domain 765 850 IPR002504 GO:0003951|GO:0006741
Lele28g0262 1036 Gene3D - 718 1028 IPR017438 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0262 Lele-ChrLele28 1546283 1551643 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0292 01 1667583 1675444 Lele28g0262 28 1546283 1551643 CCT
Lele02g0280 02 1599871 1607278 Lele28g0262 28 1546283 1551643 CCT
Lele03g0295 03 1656507 1659172 Lele28g0262 28 1546283 1551643 CCT
Lele04g0287 04 1687862 1705313 Lele28g0262 28 1546283 1551643 CCT
Lele25g0240 25 1435822 1438012 Lele28g0262 28 1546283 1551643 hybridization
Lele26g0249 26 1483917 1489295 Lele28g0262 28 1546283 1551643 hybridization