Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0237 ATGGAAGATTCCAATTTTGCTGCAACTGCTTCATCAGCAGGCGATCAGGACTCCCGGACTTGTCCTCGCGGTCACTGGAGGCCTGCTGAGGATGAAAAACTCCGGCAACTTGTCGAACAGTATGGTGCCCAGAACTGGAATTCAATCGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGATCCGAGGATTAACAGGAGGCCATTTACAGAAGAAGAGGAAGAGAGGTTACTGGCAGCTCACCGCATTCATGGGAACAAGTGGGCACTGATAGCGAGGCTTTTTCCTGGTCGAACCGATAACGCTGTGAAGAATCACTGGCACGTTATTATGGCGCGCAAGCAAAGAGAGCAATCCAAGCAGTTAAGTGGCAAGAGAGTCTTCCAAGAAGTTTACAATGATTCTTCAAGTAACACTTCTTCTAATAAAAGATCAAAATCTCAAGACATCTTTGCTTCCCAAACCTTCTTTGACTTCCGGAACATCGACAAAAGTAGAATCATTGCAGAATATCCTCCCTCAATCTCTTTGGCTTCTTGGAATTTCTCATCCATGGCGAAACAAGGAAAAGATAACAGTTACTTCAACCCCTGCTTTAACATTTATTTCTCAGATTTTTCAAAAGGTTCGGACAAATATCTTTACAGAATTTATCCAAATTCTGCATCATCGTACGGCACCATTCTACCAAACTACAGGAAGGTTGTTCCAGGTCCTTACAGATCATCAGTCACAGGTTGTGATGGTGATGATGAGAGAAATAGGATAGTAAATAAGGACTTGACGAATGTATTCAACATCTCATCCACATTGACAAAGAAGAGGGCTTCTGTGGAGCAAGAGCAAGCAGATAATCAGAGAGAAGTTCCCTTCATCGATTTTCTGGGCGTGGGTGGGAAGAAAGAAGGTAGTGAAGGTTTGCAGATTTTGATTGAATTCTTCGGTTTCTCTATTAATGTGCCAAGTTCTTACCAGGAAGGAAATGGAATACTGCCTACGATTAAATACGTGGTGGCTGCAACTATAGCAAATTTGAATACGATAGATAACAATACAAGTAGTGCGTGTAGCCCAGACGTGGAAGAGGCAGAAGGAGGAGAAGCAGTAGGTGCAAGTGGCGAAGCCGTTGGAGCAGCCAGCAGTAAGAGAATGTGCAAGGGAAGAGGCAATGCAGTTCTAAGCCTAGTGACCTGGGTGGCGCTATTGTGCTTGTTGGTTCAGCTGGAACCCGCAGGTGCCGCAACTTACACGGTGGGAGGCCCCGGAGGTTGGGGTTTCAACTCTGCTACTTGGCCCAAGGGAAAGAGATTCCGAGCCGGAGATGTCCTCGTATTCAACTACGACGCGACGATGCACAATGTGATGGCGGTGAACGGAAATGGGTACAAGAGCTGCAGTGCTCCGGCGGGTACCAAAGCGTTGAGTTCAGGGAAGGACCAGATAAAGCTGGCACGCGGCCAGAACTACTTCATTTGTGGCAATCCTGGCCACTGCCAATCCGGCATGAGACTTGCTATTAACGCACTCTGA 1557 0.4656 MEDSNFAATASSAGDQDSRTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKQLSGKRVFQEVYNDSSSNTSSNKRSKSQDIFASQTFFDFRNIDKSRIIAEYPPSISLASWNFSSMAKQGKDNSYFNPCFNIYFSDFSKGSDKYLYRIYPNSASSYGTILPNYRKVVPGPYRSSVTGCDGDDERNRIVNKDLTNVFNISSTLTKKRASVEQEQADNQREVPFIDFLGVGGKKEGSEGLQILIEFFGFSINVPSSYQEGNGILPTIKYVVAATIANLNTIDNNTSSACSPDVEEAEGGEAVGASGEAVGAASSKRMCKGRGNAVLSLVTWVALLCLLVQLEPAGAATYTVGGPGGWGFNSATWPKGKRFRAGDVLVFNYDATMHNVMAVNGNGYKSCSAPAGTKALSSGKDQIKLARGQNYFICGNPGHCQSGMRLAINAL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0237 518 SUPERFAMILY Cupredoxins 423 517 IPR008972 -
Lele28g0237 518 Pfam Myb-like DNA-binding domain 26 86 - -
Lele28g0237 518 Gene3D - 23 74 - -
Lele28g0237 518 MobiDBLite consensus disorder prediction 1 18 - -
Lele28g0237 518 PANTHER MYB PROTEIN-RELATED 23 150 - -
Lele28g0237 518 CDD Plantacyanin 423 517 IPR041844 -
Lele28g0237 518 SMART sant 22 71 IPR001005 -
Lele28g0237 518 SMART sant 74 122 IPR001005 -
Lele28g0237 518 ProSiteProfiles Myb-like domain profile. 23 69 IPR001005 -
Lele28g0237 518 FunFam MYB transcription factor 76 150 - -
Lele28g0237 518 FunFam MYB transcription factor 23 74 - -
Lele28g0237 518 Gene3D - 77 137 - -
Lele28g0237 518 ProSiteProfiles Phytocyanin domain profile. 423 518 IPR003245 GO:0009055
Lele28g0237 518 SUPERFAMILY Homeodomain-like 22 116 IPR009057 -
Lele28g0237 518 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Lele28g0237 518 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 69 IPR017930 -
Lele28g0237 518 FunFam basic blue protein-like 423 517 - -
Lele28g0237 518 Pfam Plastocyanin-like domain 438 511 IPR003245 GO:0009055
Lele28g0237 518 Gene3D - 423 517 IPR008972 -
Lele28g0237 518 CDD SANT 86 117 IPR001005 -
Lele28g0237 518 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Lele28g0237 518 MobiDBLite consensus disorder prediction 1 26 - -
Lele28g0237 518 CDD SANT 26 67 IPR001005 -
Lele28g0237 518 ProSitePatterns Type-1 copper (blue) proteins signature. 495 511 IPR028871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0237 Lele-ChrLele28 1392360 1397956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0237 21 129 MYB Transcription Factor Family AT1G17950 84.404 4.88e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele28g0237 Cu_bind_like 5.5e-25 CL0026