Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele28g0235 | ATGTCGAGGACGCTGGTGCAGCCGATAGGGCAGAAGAGGTTGACGAACGTGGCGGTAGTGCGCCTGAAGAAGAATGGAAATCGCTTCGAGATCGCCTGCTATCCAAACACGGTCCTTTCTTGGCGTTCTGGCGTGGAGAAAGATCTGGATGAAGTATTGCAGTCACATACTGTTTATTCAAATGTTTCAAAAGGAGTTCTAGCCAAGTCAAAGGATTTGATTGCTGCCTTTGGGACCGATGATCAGACAAAGATATGTTTGGAGATTTTAAAGAAAGGAGAGCTTCAGGTTGCTGGGAAAGAGAGGGAATCTATTCTTTCAAATCAGTTCAGGGATATTGCAACCATTGTTATGCAAAAGACATACAATCCTGAAACTCAACGTCCTTACACAATCAATATGATTGAAAGACTGATGCGCGAAATACATTTTGCTGTTGACCCAAACAGCAGTTCAAAGAAGCAGGCTTTGGAAGTTATTCAAGAGCTTCAAAAGCACTTTCCAATTAAACGGTGTCCACTAAGAATACGAGTTGCTGCTCCAGAGGAGGAAGCTCATTCGCTGCTAGATAAACTGAATGCTTGCAAGGCCAGCATCATTTCAAAAGAAGGATCTGCTAGTCAGTTGTCAGTTGTGTTTGAATTGGAACCTAGTCTATATAAAGAGTGCCATGACTTTGTTATGAACAACATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTATATGTGGATGGTGATACCCATGTGGACCAATACAATGATGACGAGGATCTGCCCGCTCTGTTGCCGGAAGACACTCGTGAATCTGTGCTTGAACTGAATGAAAAACTGCAGAAGCAAACAGTTTCTAACAAGAGCGGACCTAGCGAGGGGCAACAAAAGCAAAACAAGTGTAACACATGTAACGCCTCTTTTGAAAATGCTAAGCTGTATAGGGAACACCATAAGAGCGAGTGGCATAAGCACAATATGAAGCGCAAGACCAGGCAACTCCCTCCCCTTAGTGAGGAAGACTGCATGGCGGACATGGATCTGGGTGACTCAAAATCTGATTTGAAGGATTATTCTTTTTGA | 1077 | 0.4355 | MSRTLVQPIGQKRLTNVAVVRLKKNGNRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDQTKICLEILKKGELQVAGKERESILSNQFRDIATIVMQKTYNPETQRPYTINMIERLMREIHFAVDPNSSSKKQALEVIQELQKHFPIKRCPLRIRVAAPEEEAHSLLDKLNACKASIISKEGSASQLSVVFELEPSLYKECHDFVMNNMHGRFEVLAHSLYVDGDTHVDQYNDDEDLPALLPEDTRESVLELNEKLQKQTVSNKSGPSEGQQKQNKCNTCNASFENAKLYREHHKSEWHKHNMKRKTRQLPPLSEEDCMADMDLGDSKSDLKDYSF | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele28g0235 | 358 | Pfam | SBDS protein, C-terminal domain | 175 | 238 | IPR046928 | - | |
| Lele28g0235 | 358 | SUPERFAMILY | Hypothetical protein AF0491, middle domain | 98 | 171 | IPR037188 | - | |
| Lele28g0235 | 358 | Gene3D | - | 174 | 251 | - | - | |
| Lele28g0235 | 358 | Gene3D | - | 1 | 96 | IPR036786 | - | |
| Lele28g0235 | 358 | FunFam | SBDS, ribosome maturation factor | 3 | 96 | - | - | |
| Lele28g0235 | 358 | Pfam | SBDS protein, domain II | 111 | 171 | IPR018978 | GO:0042254 | |
| Lele28g0235 | 358 | SUPERFAMILY | FYSH domain | 13 | 96 | IPR036786 | - | |
| Lele28g0235 | 358 | MobiDBLite | consensus disorder prediction | 280 | 299 | - | - | |
| Lele28g0235 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 299 | 321 | IPR013087 | - | |
| Lele28g0235 | 358 | Gene3D | - | 100 | 172 | IPR037188 | - | |
| Lele28g0235 | 358 | ProSitePatterns | Uncharacterized protein family UPF0023 signature. | 46 | 65 | IPR018023 | - | |
| Lele28g0235 | 358 | TIGRFAM | RNA_SBDS: rRNA metabolism protein, SBDS family | 13 | 227 | IPR002140 | GO:0042256 | |
| Lele28g0235 | 358 | Gene3D | Classic Zinc Finger | 286 | 345 | - | - | |
| Lele28g0235 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 288 | 344 | IPR036236 | - | |
| Lele28g0235 | 358 | MobiDBLite | consensus disorder prediction | 317 | 358 | - | - | |
| Lele28g0235 | 358 | PANTHER | RIBOSOME MATURATION PROTEIN SBDS | 1 | 241 | IPR039100 | - | |
| Lele28g0235 | 358 | FunFam | SBDS, ribosome maturation factor | 100 | 172 | - | - | |
| Lele28g0235 | 358 | MobiDBLite | consensus disorder prediction | 343 | 358 | - | - | |
| Lele28g0235 | 358 | Pfam | Shwachman-Bodian-Diamond syndrome (SBDS) protein | 16 | 102 | IPR019783 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele28g0235 | Lele-ChrLele28 | 1372575 | 1374978 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele28g0235 | 28 | 358 | C2H2 Transcription Factor Family | AT1G43860 | 58.140 | 1.51e-138 | 395 |
Transcription factors information