Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0228 ATGAAAGCGATTATTCATTTACGCAGGCATGTTATATTATTATCTCCTTGGCGAATATTTTCCAAAGAAGAGGGAGATGCCATATATGACATGATGCGTAGAGTTGAGGCCGTGCCCAGGATCCGAATCCGCCTCGCGTTTGCCACCCTTCCACTCAAGATCAAATTCAGATGTCACCTTACCGCTGCTTCGGCTAAAACACAGATGAGAGGATCCTCCCCAAACATCGTAGAGCCTCGGTACCGGCCGTCGGCCTCAACTAATGAAGATACTAATAAGAGAAGATCTCAAAGAAGCAGATACTTCACAGATGTTGAGAAGGCATTACACGCTCCATTTCAGGATAGGAGTATAAATTGCAAGCCCACCTGGAAAGTGGTTATGGTTGTTATTTTATTAGGAACTCTAGTCACAATTTTCCATCCTCCAGCAATTTATGACACTGATCCTCTGTCAAACTCCATGTCAAGGCCATCTTTTGTTGACAAATGGAAAAGAGAGTTCGATACTACTGATCAGCGTTATACCTCTCTTCTAAATGTTGAGTGGGGCCAAATATCAAAAGTTCTTGCAAAATTGACAGATATGAACACATATCAGGGAGTTGGTTTGTTGAACTTTAATGAGAGTGAGATTGACCACTGGAAGCAGCTAATACCAGATGCTGAGCACATAGTTCTTCATCTGAACTATGCTTCAAGTAACATAACATGGGAAGTCCTGTACCCTGAATGGATTGATGAAGAAGAAGAATTTGAAGTTCCTGTTTGTCCTACACTGCCAAAAATTCAAGTGCCTGGAAAACCAAGGCTTGATCTTGTTGCTGTCAAACTTCCCTGCAACAAGTCAGGGAGATGGTCAAGAGATGTGGCTCGTTTGCACCTGCAGCTTGAGGCCGCAAGGCTTGCAGCCTCTTCCAAAGGGCATCATCCAGTGCGTGTGATTTTTGTCACTGACTGCTTCCCTACCCCAAATCTCTTTACATGCAAGGAACTCATTCAACGTGAAGGTAATGCGTGGCTTTATGAACCTAAGCTGCACAGTCTGAGAGCTAAGCTACAGCTGCCAGTTGGATCATGCGAACTATCAGTTCCTCTTACCGCTAAAGAAAATTTTTACTCGGAAAGGGCACACCGAGAAGCTTATGCAACCATCCTGCATTCTGCACATGTGTATGTTTGTGGAGCCATTGTTGCTGCTCAGAGTATTCGCATGGCGGGTTCAACAAGAGATCTTGTGATTTTAGTAGATGAGTCAATTAGCGACTATCATAGGGGGGGCCTGGAGGCTGCTGGATGGAAGATTCATACTATCAAAAGAATCAGGAACCCAAAAGCTGAGCCAGAGGCTTACAATGAGTGGAATTATAGCAAATTCCGCCTTTGGCAGCTAACAGAATATGACAAAATTATTTTCATCGATGCTGACCTGCTTATACTGAGAAATATCGATTTCCTCTTTGAGATGCCCGAGATATCAGCCATAGGAAATAATGCAACCCTTTTCAACTCGGGAGTAATGGTAATTGAACCATCACAATGTACATTTCAGTTGTTAATGGATCACATTAATGAGATTGTCTCCTACAATGGCGGAGACCAGGGGTATCTCAATGAAATATTCACATGGTGGCATCGGATTCCAAAACACATGAACTTTTTGAAGCACTTCTGGGAAGGCGATGAGGAGGAGAAAAAAGAGATGAAAACTCGTCTCTTCGGAGCTGATCCTCCAATCCTTTATGTCCTCCATTATTTGGGTAATAAACCGTGGCTTTGCTTCCGAGATTATGACTGCAACTGGAATGTGGACATTCTGCGGGAGTTTGCCAGTGATATGGCTCATGCGACATGGTGGAAGGTGCATGATGCCATGCCAGAGAAGTTACAGAAGTTCTGTTTGCTTAGGTCCAAGCAGAAGGCGCAGTTAGAGTGGGATCGCAGACAAGCAGAGAAAGGGAACCACTCTGATGGTCACTGGAAAATTAAGATAAAAGACGAGCGTTTAAAAACATGCTTTGAGGATTTCTGCTTCTGGGAGAGCATGTTATGGCACTGGGGCGAAAAGAATTGGACAGATAATTCGACAGCTACAAATTCACCACCTGCCATCACTACCAAAACTCTCTCTTCGTCATAA 2139 0.4376 MKAIIHLRRHVILLSPWRIFSKEEGDAIYDMMRRVEAVPRIRIRLAFATLPLKIKFRCHLTAASAKTQMRGSSPNIVEPRYRPSASTNEDTNKRRSQRSRYFTDVEKALHAPFQDRSINCKPTWKVVMVVILLGTLVTIFHPPAIYDTDPLSNSMSRPSFVDKWKREFDTTDQRYTSLLNVEWGQISKVLAKLTDMNTYQGVGLLNFNESEIDHWKQLIPDAEHIVLHLNYASSNITWEVLYPEWIDEEEEFEVPVCPTLPKIQVPGKPRLDLVAVKLPCNKSGRWSRDVARLHLQLEAARLAASSKGHHPVRVIFVTDCFPTPNLFTCKELIQREGNAWLYEPKLHSLRAKLQLPVGSCELSVPLTAKENFYSERAHREAYATILHSAHVYVCGAIVAAQSIRMAGSTRDLVILVDESISDYHRGGLEAAGWKIHTIKRIRNPKAEPEAYNEWNYSKFRLWQLTEYDKIIFIDADLLILRNIDFLFEMPEISAIGNNATLFNSGVMVIEPSQCTFQLLMDHINEIVSYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKEMKTRLFGADPPILYVLHYLGNKPWLCFRDYDCNWNVDILREFASDMAHATWWKVHDAMPEKLQKFCLLRSKQKAQLEWDRRQAEKGNHSDGHWKIKIKDERLKTCFEDFCFWESMLWHWGEKNWTDNSTATNSPPAITTKTLSSS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0228 712 FunFam Hexosyltransferase 377 629 - -
Lele28g0228 712 SUPERFAMILY Nucleotide-diphospho-sugar transferases 380 630 IPR029044 -
Lele28g0228 712 PANTHER GLYCOGENIN SUBFAMILY MEMBER 288 672 - -
Lele28g0228 712 CDD GT8_Glycogenin 380 625 - -
Lele28g0228 712 Pfam Glycosyl transferase family 8 386 592 IPR002495 GO:0016757
Lele28g0228 712 MobiDBLite consensus disorder prediction 67 98 - -
Lele28g0228 712 MobiDBLite consensus disorder prediction 67 86 - -
Lele28g0228 712 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 377 628 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0228 Lele-ChrLele28 1322606 1328160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0228 71 688 Glycosyltransferase AT1G77130 69.712 0.0 886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0228 28 1322606 1328160 Lele01g0861 01 4969567 4972831 CCT
Lele28g0228 28 1322606 1328160 Lele02g0841 02 5113822 5117121 CCT
Lele28g0228 28 1322606 1328160 Lele03g0856 03 4989269 4992533 CCT
Lele28g0228 28 1322606 1328160 Lele04g0858 04 5247846 5251121 CCT
Lele25g0208 25 1240105 1247600 Lele28g0228 28 1322606 1328160 hybridization
Lele26g0219 26 1266385 1273253 Lele28g0228 28 1322606 1328160 hybridization