Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0204 ATGAAGACTCCGACCACTCCCCCCGTTTCCCAACCTCCTCAAATGCCTTTGTTTCGCAAATCATCATCTTCTCCCTCACCCACCCCCTCCACGCCTTCATCTATTTCTCCTTCTTCCCTCAAACAAACTGACGTCGATGCCGCTGGTGATGTCTCTAGTCCCGTTCACAGCTCGGAGCAATCAACTCCCCGCCGCCGCCGCCGCCGCCTTACTCGAGCCAGGAAGCTTCGCCACCTTACCGACCATGATGTTGGCCTGCACCTCACTGACGATTCTTCGCTCCCGGCTTCCCCTCCGTCCTCTCGCAAGTCTCGCTCATCGGGCGGTTCCGAACACTGGTCCTCCTCTGCCGTGCCTCAACCCCTGCCGCTTCCCGAATCACCGTTGACTCGCCGAACGGAGTCTACCGTTCCTAATCCCGGACAGTTCCAGCTCGGATCTCCTTCCATAGACCATTCGGGATTTGCTTTCGGGAGGAAGACGGTGGATCACGATGCAGTCATAAACATGAAGTCTTGGAGCCATATGGATAGATCTTGTGATCTAACATCTGCAAACGCGAAGTTTAATCTGAGAGTAAACATCCCGGTTGCAAGTTTCTTGACAGGTCAAAATTCATGTAAAGATCGAGCAATCTCTCATGATATGGACTCTGAAAGTATTTATGACTCAAGATTGCGTGTGGCCCTAAAGAGTGCCCCAACAAGTGTTTTTTCCAGTCCTGTTACCAGTCCGCGGAGATCAAGCAAGGTAGATTTCACTGATCATTTCATTAGTACTCAAGAATTGCATGACAACCCTGTTGGCCATCCTCCAAAAGTGTCACCACACTTGAATGTTCAAAGTCCAGATCGTTCTTCTCTCCGTAGCCCAGGGCGCCATAGTCCTTTCCTCAATCTCAAAATCCAAGATGGATGTCAGCATAGATTTCATTCCAGGGCATGGCCAGAAAATAACCATGCCGATGCACATCCTTTGCCTCTCCCTCTTCCTCCTGGAGCTTCACCACCAGCACAATCATCTGTGCAGTGTCAATCAAGTGCCATGCATCAATTTTCAGGGAAAGGTCAATGGCAGAAAGGAAAACTTATTGGACGGGGCACTTTTGGAAGTGTTTATCATGCAACAAACCTAGAGACCGGTGCGTCATGTGCAATGAAGGAGGTGGATATCATTCGAGATGACCCTAACTCTGCCAACTGTATAAAGCAACTAGAGCAGGTTGGTGATCACTTGTGCATTTATATGGAGTATATTCATCCAGGGTCGGTCGATAAATTTGTGCGGGCAAATGGTGAAGCGATGACAGAGTCTGTAGTTCGCAATTTTACACGGCATATTCTCTCAGGGTTGGCTTACTTGCACAGTACCAAAACTATCCATAGGGACATCAAAGGAGCAAACTTACTTGTTGATGCATCAGGCACCGTCAAGCTTGCTGATTTTGGAATGGCAAAAGTTGTGAGTGTTCTAGACTTACTGGTTCTAAACTCAATTTACCTATGTGTCCAGAAACGTGCAATGCTAACAGGGCAATCATATGCCCTTTCCTTAAAGGGCAGTCCATACTGGATGGCTCCTGAGGTCATGAAGGCTGCCATGATGAAAGATGACAATCCTTACCTTGTCTATGCTATTGATATCTGGAGCTTAGGTTGCACTATCATAGAGATGCTGACAGGAAAACCTCCTTGGAGTGACTTTGAAGGGCCTCAAGCCATGTTCAAGGTACTGCACAATGCGCCACCGATACCAGAAACATTATCTTCAGCAGGAAAGGATTTTCTTCAGAGATGTTTTGAAAGGGATCCTGCAAATCGACCATCAGCTGCAAGGCTTCTTGAGCACGCCTTTGTTCAAAATTTGCATGATCAGGTTGTTTTTGCTCACCCACAATCATATCCTAGAGAAGACCCTGAAGATAATTCACGTTGTCCCAAAGACACCACTACACAGAACCGTGATGTGATTCGAGCCTCCATGGGCTCCCGGTTCATCAACAAAATCCAGAAACTGATCGGTGATTCTTCCCAACAATATAATGCTGAGGATTCTAAATATTCTACATCTCATTACTCTCCTTACTCTCTGCCAGAAGTTAAAATTCCTAAGTCGTCCTTGAAACCAGCTGCCCTCAATTACGTTTCTGCTTCAAAATCCACCAACATAGTCCCTCGCTGTAATGAGATTCGTCACGCACCTTTCATTCCATCTTATTTACCATCATGGAGGCTGGGATTTACAAGCTGCTCATTCATGGTCACAAATATATCAATCTCAAGGGGCAATAGAGAGCGAAAAGTTCACAATTACTTGTACCAATAA 2325 0.468 MKTPTTPPVSQPPQMPLFRKSSSSPSPTPSTPSSISPSSLKQTDVDAAGDVSSPVHSSEQSTPRRRRRRLTRARKLRHLTDHDVGLHLTDDSSLPASPPSSRKSRSSGGSEHWSSSAVPQPLPLPESPLTRRTESTVPNPGQFQLGSPSIDHSGFAFGRKTVDHDAVINMKSWSHMDRSCDLTSANAKFNLRVNIPVASFLTGQNSCKDRAISHDMDSESIYDSRLRVALKSAPTSVFSSPVTSPRRSSKVDFTDHFISTQELHDNPVGHPPKVSPHLNVQSPDRSSLRSPGRHSPFLNLKIQDGCQHRFHSRAWPENNHADAHPLPLPLPPGASPPAQSSVQCQSSAMHQFSGKGQWQKGKLIGRGTFGSVYHATNLETGASCAMKEVDIIRDDPNSANCIKQLEQVGDHLCIYMEYIHPGSVDKFVRANGEAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDASGTVKLADFGMAKVVSVLDLLVLNSIYLCVQKRAMLTGQSYALSLKGSPYWMAPEVMKAAMMKDDNPYLVYAIDIWSLGCTIIEMLTGKPPWSDFEGPQAMFKVLHNAPPIPETLSSAGKDFLQRCFERDPANRPSAARLLEHAFVQNLHDQVVFAHPQSYPREDPEDNSRCPKDTTTQNRDVIRASMGSRFINKIQKLIGDSSQQYNAEDSKYSTSHYSPYSLPEVKIPKSSLKPAALNYVSASKSTNIVPRCNEIRHAPFIPSYLPSWRLGFTSCSFMVTNISISRGNRERKVHNYLYQ 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0204 774 Pfam Protein kinase domain 408 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0204 774 ProSitePatterns Protein kinases ATP-binding region signature. 364 387 IPR017441 GO:0005524
Lele28g0204 774 MobiDBLite consensus disorder prediction 15 46 - -
Lele28g0204 774 MobiDBLite consensus disorder prediction 129 149 - -
Lele28g0204 774 Gene3D Transferase(Phosphotransferase) domain 1 351 693 - -
Lele28g0204 774 MobiDBLite consensus disorder prediction 93 117 - -
Lele28g0204 774 MobiDBLite consensus disorder prediction 262 294 - -
Lele28g0204 774 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 24 632 - -
Lele28g0204 774 MobiDBLite consensus disorder prediction 279 293 - -
Lele28g0204 774 MobiDBLite consensus disorder prediction 1 150 - -
Lele28g0204 774 SUPERFAMILY Protein kinase-like (PK-like) 356 686 IPR011009 -
Lele28g0204 774 MobiDBLite consensus disorder prediction 317 341 - -
Lele28g0204 774 ProSiteProfiles Protein kinase domain profile. 358 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0204 774 SMART serkin_6 358 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0204 Lele-ChrLele28 1195792 1200496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0204 226 621 MAP Kinase Kinase Kinase AT5G66850 48.451 2.63e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele28g0204 Pkinase 3.6e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0945 01 5453411 5455573 Lele28g0204 28 1195792 1200496 CCT
Lele02g0947 02 5740719 5742932 Lele28g0204 28 1195792 1200496 CCT
Lele03g0942 03 5470399 5472958 Lele28g0204 28 1195792 1200496 CCT
Lele04g0939 04 5783040 5785213 Lele28g0204 28 1195792 1200496 CCT
Lele25g0191 25 1136985 1141998 Lele28g0204 28 1195792 1200496 hybridization
Lele26g0199 26 1174590 1179257 Lele28g0204 28 1195792 1200496 hybridization