Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0196 ATGGCATGCCGGGACTGTGAGGCGAACTTAAATGCGAGGAGGCCTCACTTCTACGAGCTTTATTCCTCCACATCGAGTTCGGAGAGACTGAGAATTCCTGCTGGATTCAGCCATTGCATCCAAGGTAGGACGTCTGGTTTAGTCTCATTGACAGGTCCTAGCGGAAATACTTGGCATGTTCAATTGGTTAAGGAGGGGAATGATATATTCCTCCATCATGGATGGCCGACATTTTTGGAAGATCATGTTGTAGAAGTTGGTGACCTTTTGGTTTTCAGATATGAGGGTCACTTACACTTCACTGTGCTAGTCTTTGATCAGAGAGCATGTGAGAAAGAAGCAGCATTTATATCTAAATGCAGTCAAAATTCAAGTGAACTCAATCATATTAATGCATATAAAAGAAATAGGGAGGATAATTGTTCTTTGAATTTTGTTGCTGAAGGCTGGACGAAGAAAATGAAAGGGAGTGCCTTTGAGAACCAGGAACTTAGGATGAGTATAGTTAGTAAAGATTCATCCTTGTTTGAATGGGTAAAACCAATTAATATGTTCAGAGAAAAAGGAGGATCCTCCAAAGAAGATGCACAACTTAGATGCCCAGATGGTAATGTTTCTGTGCCTTCTCAAATTGAATATAGCAACGAATGTGAAGAGGCTGCTATGCAGATTGGAAGTGGGAAAGAAGATGACCAATATATGCATAGTAGAGTTTGTCTGTCGAAGTTATCGTCATACGATGAGAGAAGAGTAGCTCAATTGTTTACGTCCTCTTTCCCATATTTTGTGAGAATCATGAAAAGCTTCAACATCAGTGGTTCATATACACTGAATATCCCGTATCAATTTTCAATGGCACATCTTCCAAACTGCAAGATAAAGATCATCCTTCATAATATAAACGGGGAGCATTGGACTGTTAATTCTGTGCCAACAACAAGAGTACATACAAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGTGACAATAACATTAAGGTTGGAGATATCTGCATCTTTGAACTTGTGCATGAGTGTGAATTACGTGTCCGCATTGTTGGAGTAGGAAAAGATGGGACAGACTGTCAGGTTGGGAATGTAGCTTTTAGTAGGTCTCTTACAGGACATTCCTTCAATTCCCATAGAACTTCTCTATATATGCCGATAAAGGCTAAAGTCAACCCAAAGTGCAATGGAAATGTTGATCTGTCTGATAAAAAGCGGTCACGGATGGGTCAAGATGCTGCTTTGTCTATGGATAAAAAGAAACCTGTCAGAGTGTCGAAGGATTCTAAGAAAACAGGGATTTGCCCTCAGTCAAAAGCTGCCCATAATAAGTTGGCTGTTCAGAGAAGACGTCGAACCGACGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGCTGTTCGCACTTGACGAACAAAGAGCAGCTCAGGCCTTCACATCCTCATTTCCTAGTTTTGTAAAAGTCATGAAAAAGTTCAACGTCAGCGGATCATACACTTTGAAAATCCCATATCAATTCTCTGCAGCGCATCTCCCATCCTACAAAACAGAAGTTGTGCTCCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTTCCAGACACAAAAGGCAGAGCAGTGCACACGTTTTGTGGGGGATGGATGGCCTTTGTCCGTGATAATGACATCAATTTTGGAGACACTTGCATTTTCGAACTTGTTGCTCAGTATGAAATGCAAGTTTATATTTCTGGTATTGGTAAGGAAGGGCTTGACCATCAGAACATGGAACCAAAATCTAGTAGACTAGCTTTAGTTCCATCTACCAGTACACACCCATGCTTGTGA 1848 0.4134 MACRDCEANLNARRPHFYELYSSTSSSERLRIPAGFSHCIQGRTSGLVSLTGPSGNTWHVQLVKEGNDIFLHHGWPTFLEDHVVEVGDLLVFRYEGHLHFTVLVFDQRACEKEAAFISKCSQNSSELNHINAYKRNREDNCSLNFVAEGWTKKMKGSAFENQELRMSIVSKDSSLFEWVKPINMFREKGGSSKEDAQLRCPDGNVSVPSQIEYSNECEEAAMQIGSGKEDDQYMHSRVCLSKLSSYDERRVAQLFTSSFPYFVRIMKSFNISGSYTLNIPYQFSMAHLPNCKIKIILHNINGEHWTVNSVPTTRVHTSHTLCGGWMAFVRDNNIKVGDICIFELVHECELRVRIVGVGKDGTDCQVGNVAFSRSLTGHSFNSHRTSLYMPIKAKVNPKCNGNVDLSDKKRSRMGQDAALSMDKKKPVRVSKDSKKTGICPQSKAAHNKLAVQRRRRTDDELSSQAKAGLRMLFALDEQRAAQAFTSSFPSFVKVMKKFNVSGSYTLKIPYQFSAAHLPSYKTEVVLRNSRGECWTVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVAQYEMQVYISGIGKEGLDHQNMEPKSSRLALVPSTSTHPCL 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0196 615 Pfam B3 DNA binding domain 22 107 IPR003340 GO:0003677
Lele28g0196 615 Pfam B3 DNA binding domain 491 576 IPR003340 GO:0003677
Lele28g0196 615 Pfam B3 DNA binding domain 266 354 IPR003340 GO:0003677
Lele28g0196 615 MobiDBLite consensus disorder prediction 403 432 - -
Lele28g0196 615 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Lele28g0196 615 Gene3D - 245 357 IPR015300 -
Lele28g0196 615 Gene3D - 476 586 IPR015300 -
Lele28g0196 615 SMART B3_2 262 358 IPR003340 GO:0003677
Lele28g0196 615 SMART B3_2 17 108 IPR003340 GO:0003677
Lele28g0196 615 SMART B3_2 491 589 IPR003340 GO:0003677
Lele28g0196 615 CDD B3_DNA 260 354 IPR003340 GO:0003677
Lele28g0196 615 CDD B3_DNA 489 583 IPR003340 GO:0003677
Lele28g0196 615 MobiDBLite consensus disorder prediction 402 439 - -
Lele28g0196 615 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 21 362 IPR044837 -
Lele28g0196 615 Gene3D - 8 110 IPR015300 -
Lele28g0196 615 SUPERFAMILY DNA-binding pseudobarrel domain 255 356 IPR015300 -
Lele28g0196 615 CDD B3_DNA 22 106 IPR003340 GO:0003677
Lele28g0196 615 ProSiteProfiles B3 DNA-binding domain profile. 262 358 IPR003340 GO:0003677
Lele28g0196 615 ProSiteProfiles B3 DNA-binding domain profile. 491 587 IPR003340 GO:0003677
Lele28g0196 615 SUPERFAMILY DNA-binding pseudobarrel domain 484 585 IPR015300 -
Lele28g0196 615 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0196 Lele-ChrLele28 1148646 1152079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0196 14 356 B3 DNA Binding Superfamily AT3G18990 24.793 1.10e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele28g0196 B3 3.7e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0191 26 1118925 1128727 Lele28g0196 28 1148646 1152079 hybridization