Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0192 ATGTTCACTACATCGCATACGGTAATTCGAAGCTTGACAAATTTGCCAGACCTGTCCTTAAACATAAGCCCACCGTGTATTTCAGAATGGGAAGCCAAAGAGTTTACGAGCAAAACACTTTACAATGATATATGCTCAACATCTGATTCTGGTAGCAGTGCTGGAAGTGAGTTAAGCCATGAGAATAGCTTTCTTCACCTTGGCCATCCTGAGCCCACGTTGAGCCTAGGCTTAGAAACCCCAGATTTGAACCCCCATCTTTTCCAGGGGCTCTCAAGAAACTTTAACCCTCACTTCCACAACCATCGACCCCACATTTTTGCCCGGAGCTTTAAACGAAATGCAAGGATCAGTGATGGTGCGAAAAGAAGCGTTAGAGCTCCTAGAATGAGGTGGACCACAACTCTCCACGCCCAGTTTGTTCGTGCGGTTCAGCTCCTTGGCGGTCATGAAAGGGCTACTCCGAAGTCTGTATTAGAGTTAATGAATGTTAAGGATCTAACCTTAGCCCACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACCGACAAAGGGACAGGTCATGGGCAGACAGATATGGGTTTGAACCAAAGGCCACCAGCAGAGAACAATGCGGATGTGCATGGAGCTTCAGCCTGTGAGGGAACCCGTTTATTCCCACAATCTCTCCACAAATCCCTCAGAGCATCGTGGCAATCGTCAATGGAGACAAATAAAAATGACCGTAGACAAAATTCCCAAATTGATTGGACTCATTCTCATGATCTCAATGCAAAGGAAACAAAGGTGGATGGAGGTAATAGAGGAGTGTGGAATTGCGTGAAGGAGAGATTGGATTGTAGCAATTTGTCACGTTCGGATATGATGCTTGACCTAGAATTCTCACTTGGAAGACCCACTTGGCAAACAAATCTTCAGCAGACTTAG 936 0.4573 MFTTSHTVIRSLTNLPDLSLNISPPCISEWEAKEFTSKTLYNDICSTSDSGSSAGSELSHENSFLHLGHPEPTLSLGLETPDLNPHLFQGLSRNFNPHFHNHRPHIFARSFKRNARISDGAKRSVRAPRMRWTTTLHAQFVRAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTGHGQTDMGLNQRPPAENNADVHGASACEGTRLFPQSLHKSLRASWQSSMETNKNDRRQNSQIDWTHSHDLNAKETKVDGGNRGVWNCVKERLDCSNLSRSDMMLDLEFSLGRPTWQTNLQQT 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0192 311 SUPERFAMILY Homeodomain-like 125 182 IPR009057 -
Lele28g0192 311 MobiDBLite consensus disorder prediction 184 211 - -
Lele28g0192 311 Pfam Myb-like DNA-binding domain 129 180 IPR001005 -
Lele28g0192 311 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 307 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lele28g0192 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 128 181 IPR006447 GO:0003677
Lele28g0192 311 MobiDBLite consensus disorder prediction 184 201 - -
Lele28g0192 311 Gene3D - 127 184 - -
Lele28g0192 311 FunFam Myb family transcription factor 126 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0192 Lele-ChrLele28 1118079 1120382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0192 1 219 G2-like Transcription Factor Family AT5G42630 51.584 2.12e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele28g0192 Myb_DNA-binding 1.8e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0178 25 1074446 1076865 Lele28g0192 28 1118079 1120382 hybridization
Lele26g0189 26 1104981 1106861 Lele28g0192 28 1118079 1120382 hybridization