Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0181 ATGTTGGGCCTGGTCCTGGTCCCTCTAGGGAAGCGAAGAGAGCAACCACAGCCTCCTTGTCTAACAGACGTGGAGTCGGATAGATTAAGTTGCTTACCGGCTCATGTTATAGACCACATTCTGTCACATTTGTCAATTCGGGAAGCAGTGAGGACAAGTGTTCTATCGAGCAAATGGAGGTACAAATGGTCTACTCTGCCAAATCTTGTGTTTGATAACCAGTGTCTCCCCATATCTTCCCAAGACCACTCAATTATCAAGAGCAAGCTTGTGAGAATTGTTGATCATGTGCTTTTGCTTCACTCTGGTGCAATAAACAAGTTCAAGCTCTCCCATCGTGATCTAATTGGTGTGACTGACATTGATCGTTGGACTCTTCATTTAACCAGAAGGTCTGTCAAAGAGCTTGTGCTGGAAATCTGGAAAGGGCATCGGTACAAGATACCCTCTTGTTTATTTACTTGCCAAAGTTTAATTCATTTGGAATTATTTAACTGCTGGCTTAAGCCTCCATCAACATTTATAGGCTTCAGGAACTTGAAGAGTCTTGATCTACAGCATGTTACCATGGATCAAGATGTGTTTGAAAACTTGATATCTAATTGCCCACTGCTTGAACGTCTAACATTGATGAACTTCGATGGCTTCACTTATCTCAACATTGATGCACCGAATCTTCAGTTTTTTGACATTGGAGGCAAATTTGAGGAAGTTAGATTTGAGAACACTTTCCATTTAGCTGTCGTATCCATTGGTTTGTATTTGAACCTTGAAAACGAGAAAAATAGATGGCAAGGAAGTTCTAGCAACTTGCTCAAGTTCTTCGTTCATCTACCTCATGTTAGAAGGTTGGAGGTTCAAAGCTATTTTTTAAAGTATTTGGCAGTAGGGGTTGTGCCACTAAAGCTTCCTAGATCATGCGTAGATTTAACTTATCTTTCCATACGCATCAATTTCAACGATTCCAAAGAAATTTCAGCTGCTTTGTGCCTTTTAAGGAGTTCTCCGAATCTTCAAGAACTAGAAGTGTTGGCTCGCACTGAGGACCAACAGACTACTCTGGGAACACAGGCCTACTGTTGGGAGGATGAGTATTGTAATTGCCCAGTGATGCAACTGCAACTGGTTAGGATAGACGGTATCTCTGGCATCAAACCCGAACTAGATTTCATCAGCTTTCTGCTTTTATATTCTCCCGTTCTAGAACGGATGACTGTGAAACCTGCTTCTTCAAATGGAGGATCGGAGTTAATGAAAGAATTATTGCGGTTCAGAAGAGCGTCAGGACGAGCTGAAATTATATACCTGGATCCTTGA 1317 0.4169 MLGLVLVPLGKRREQPQPPCLTDVESDRLSCLPAHVIDHILSHLSIREAVRTSVLSSKWRYKWSTLPNLVFDNQCLPISSQDHSIIKSKLVRIVDHVLLLHSGAINKFKLSHRDLIGVTDIDRWTLHLTRRSVKELVLEIWKGHRYKIPSCLFTCQSLIHLELFNCWLKPPSTFIGFRNLKSLDLQHVTMDQDVFENLISNCPLLERLTLMNFDGFTYLNIDAPNLQFFDIGGKFEEVRFENTFHLAVVSIGLYLNLENEKNRWQGSSSNLLKFFVHLPHVRRLEVQSYFLKYLAVGVVPLKLPRSCVDLTYLSIRINFNDSKEISAALCLLRSSPNLQELEVLARTEDQQTTLGTQAYCWEDEYCNCPVMQLQLVRIDGISGIKPELDFISFLLLYSPVLERMTVKPASSNGGSELMKELLRFRRASGRAEIIYLDP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0181 438 SMART fbox_2 32 72 IPR001810 GO:0005515
Lele28g0181 438 PANTHER F-BOX PROTEIN-LIKE 27 410 - -
Lele28g0181 438 Pfam F-box domain 29 62 IPR001810 GO:0005515
Lele28g0181 438 Gene3D Ribonuclease Inhibitor 122 345 IPR032675 -
Lele28g0181 438 Gene3D - 19 102 - -
Lele28g0181 438 ProSiteProfiles F-box domain profile. 26 74 IPR001810 GO:0005515
Lele28g0181 438 SUPERFAMILY F-box domain 27 71 IPR036047 GO:0005515
Lele28g0181 438 Pfam Leucine Rich Repeat 179 203 IPR013101 -
Lele28g0181 438 SUPERFAMILY RNI-like 126 342 - -
Lele28g0181 438 SMART 9598neu4hmm 367 436 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0181 Lele-ChrLele28 1058358 1062663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0181 24 246 EF-hand Containing Proteins AT5G41840 25.714 3.27e-13 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0170 25 1030669 1032433 Lele28g0181 28 1058358 1062663 hybridization
Lele26g0178 26 1047336 1052736 Lele28g0181 28 1058358 1062663 hybridization