Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0179 ATGGGCTGGCTTAGCAAAATTTTTAAAGGCTCTGACCATAAAATTTCGGAAGGGCATTATAACGCAAACTATAGGGAGGATACAGATTATTACTTACCGTCAACTTCAGGGGATGTCTGGTCAGAGAACGAGAACGAAGATATAGATCGTGCTATTGCACTATCTCTTGTAGAGGAAAATCAGCCAAGAAAGAACATAAAGGACCGCAAGTCACAATTAGAAGAAGATGAACAACTTGCTAGAGCAATTCAAGAAAGTCTAAATGTTGAGTCTCCTCCCAGATATGGAAATGGAAATATGTATCAACCGCCAATGCCTGTGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGTTGTAATTCTGAGATTGGTTTTGGACGATATCTAAATTGCTTGAGTGCATTCTGGCATCCTGAATGCTTCCGTTGCCGTGCTTGCAACCTCCCAATATCTGATTATGAGTTTTCCACATCTGGGAATTACCCTTATCATAAATCATGCTACAAAGAAAACTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGAGCACATCCTTTCTGGATCCAGAAATATTGCCCTTCTCACGAACATGATGGTACTCCACGCTGTTGCAGCTGTGAGCGTATGGAGCCACGAGAGGCAGGATACATTGCTCTTAATGATGGTCGAAAGCTATGCCTGGAATGTCTGGATTCTGCTATCATGGATACTAGCGAGTGCCAACCCCTTTATTCAGACATACAAAAATTTTATGAAGGTCTTCATATGAGACTGGAGCAGCAAGTTCCATTGCTCTTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGGGAGAGGAATGGCCACTATCACATGCCTGAGACCAGGGGACTCTGCCTTTCTGAAGAACAGACTATCCACACTGTCTTGAGGCGACCTAGATTTGGAATGGGCAATAGGGCAGTAGACATGAGAACACAACCCTACAAACTGACTCGACGATGTGATGTGACAGCAATTCTCATTTTGTATGGCCTTCCCAGGTTGCTTACTGGATCAATCCTAGCTCATGAAATGATGCATGCATGGCTGCGACTTAAAGGTTATCGGACTCTCAGACAAGATGTTGAAGAAGGTATCTGTCAGGTTGTGGCGCATATGTGGTTGGAGTCTGAGCTTTCATCTGCATCATCAGCCTCATCCTCATCTTCATTCTATGCATCCTGGAAAGCCAAAAGACCTCAATTTGAGAGGAAGCTGGGGGAATTTTTCAAGCACCAGATCGAATCAGATATTTCCCCCGTTTATGGCGATGGATTCAGGGCAGGCCAACTGGCAGTTCGTAAGTATGGTCTCGAAAACACCCTTCACCATATTTGGATGACTGGGAATTTCCCCCCCTAA 1422 0.4409 MGWLSKIFKGSDHKISEGHYNANYREDTDYYLPSTSGDVWSENENEDIDRAIALSLVEENQPRKNIKDRKSQLEEDEQLARAIQESLNVESPPRYGNGNMYQPPMPVYFPMGSRICAGCNSEIGFGRYLNCLSAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKENYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMEPREAGYIALNDGRKLCLECLDSAIMDTSECQPLYSDIQKFYEGLHMRLEQQVPLLLVERQALNEAREGERNGHYHMPETRGLCLSEEQTIHTVLRRPRFGMGNRAVDMRTQPYKLTRRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLRQDVEEGICQVVAHMWLESELSSASSASSSSSFYASWKAKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQLAVRKYGLENTLHHIWMTGNFPP 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0179 473 SMART lim_4 115 167 IPR001781 -
Lele28g0179 473 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
Lele28g0179 473 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 74 93 IPR003903 -
Lele28g0179 473 Gene3D Cysteine Rich Protein 111 189 - -
Lele28g0179 473 ProSitePatterns LIM zinc-binding domain signature. 116 150 IPR001781 -
Lele28g0179 473 SMART uim 74 93 IPR003903 -
Lele28g0179 473 SMART uim 43 62 IPR003903 -
Lele28g0179 473 Pfam Protein DA1 265 467 IPR022087 -
Lele28g0179 473 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 108 141 - -
Lele28g0179 473 ProSiteProfiles LIM domain profile. 114 174 IPR001781 -
Lele28g0179 473 FunFam Protein DA1-related 1 110 169 - -
Lele28g0179 473 PANTHER PROTEIN DA1-RELATED 2 3 472 IPR045218 -
Lele28g0179 473 Pfam LIM domain 116 170 IPR001781 -
Lele28g0179 473 CDD LIM_DA1 116 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0179 Lele-ChrLele28 1046851 1051198 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele28g0179 DA1-like 4e-96 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0168 25 1018308 1022706 Lele28g0179 28 1046851 1051198 hybridization