Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0159 ATGACCGAATATTCGTTAGCCCAACGATTCCACGACTCACCTGGTCAGGAGGAACATGCCCTGAGAGATGGATTTGGTTGTGCGGTTGATGGAGGATTGGATCTTGATGTCGTCTACGGATCTTGTGGATCTGATCTTTGGAGTGTTTGGATACTGAGGTGCGCTTGCATATGCATGGCAGAACTTAGTGTGAAGCTAAAACAGTTACTCCCCACTGTTGACTTGAATCCATATGCTATCGACTTGAAGATAAAACAGAGATGCAATGTTCATATTTGTGATAGAGCAAAGAGTCCCTGGCTAGGCAACTTCCTCAACGGTACCGAATATGGATCCCAGCGGAACTTATTAGCCTTCAATTCTTTGTCCATTATATTTCTTTCATATTTGTATTCCTTCTTGAAAATAAGCAGCTTGTGCCACTTTTCTTTCTTAATTCCCCTCCTCTCTCAGCACAGGACTCTTCTACCACTCAAAGTAGATTGTCGAGTATTACACTATAAAGCCTTGCATTTAAGCAAATTTCAGTTCATCATGTTCGAGTCCCAGAACAACGGTCAACACGACCAAGAAAGCAGCAACGTTTACACTGCATCGAAGATTGAGGAGCTCAAGGCTGCGATTGGGCCCTTATCTGGGCGCAGCTTAAAGTACTGCAGTGATGGTTGTTTGAGAGGGTATCTGGAAGTTAACAACTGGAACGTGAAAAAGGCCAAGAAGATGTTGGAGAACACACTCGAGTGGAGATCAACCTACAAGCCTGAGGAAATCCGCTGGCACGAGGTTGCAAAGGAAGGAGAGAGAGAGGTGATGTACAGAGCAAGTTTTCATGACCGACAGGGAAGGACAGTTATCATAATGAGAGCGGGGGTTGCAATTCAGAAAATATCTTCGATTGAAAATATTATACGGTTCAATGTGTACCTTCTGGAGAATGCGGTGCTTAACTTTGAGGAAGGCCAAGAGCAAATGGCGTGGTTGATAGATTTCAGTGGATGGTCACTCACCAAGAGCATGCCCATTAGATTATCAAGAGAGTTTATTAACATTGTACAAAATCACTATCCTGATAGGCTTGCCATAGCATTTCTTTACAATCCTCCGAGGGCTTTTGAGGCCTTCTTGAAGATAATCAAGTACTTCGTGGATAACAAGACAATTGAGAAGGCCAAGTTCGTGTACCCCAAAGAGAAAGAAAGCGTGGATCTCATGAAGTCCTACTTTGATGAAGAAAATCTTCCCATAGAATTTGGGGGGAAAGCTACAATGAAGTATGAGCATGAGGAATACTCAAGATTAATGGCTCAGGATGATTTGAAATCCGCTGCGTTTTGGGGAACTGATGACAGCCTCTCAAGCCACGTTGGTGCTGGCCAGTCCAGTGCCTAA 1389 0.4384 MTEYSLAQRFHDSPGQEEHALRDGFGCAVDGGLDLDVVYGSCGSDLWSVWILRCACICMAELSVKLKQLLPTVDLNPYAIDLKIKQRCNVHICDRAKSPWLGNFLNGTEYGSQRNLLAFNSLSIIFLSYLYSFLKISSLCHFSFLIPLLSQHRTLLPLKVDCRVLHYKALHLSKFQFIMFESQNNGQHDQESSNVYTASKIEELKAAIGPLSGRSLKYCSDGCLRGYLEVNNWNVKKAKKMLENTLEWRSTYKPEEIRWHEVAKEGEREVMYRASFHDRQGRTVIIMRAGVAIQKISSIENIIRFNVYLLENAVLNFEEGQEQMAWLIDFSGWSLTKSMPIRLSREFINIVQNHYPDRLAIAFLYNPPRAFEAFLKIIKYFVDNKTIEKAKFVYPKEKESVDLMKSYFDEENLPIEFGGKATMKYEHEEYSRLMAQDDLKSAAFWGTDDSLSSHVGAGQSSA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0159 462 SMART sec14_4 265 422 IPR001251 -
Lele28g0159 462 SUPERFAMILY CRAL/TRIO N-terminal domain 198 261 IPR036273 -
Lele28g0159 462 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 260 425 IPR001251 -
Lele28g0159 462 CDD SEC14 277 420 IPR001251 -
Lele28g0159 462 SUPERFAMILY CRAL/TRIO domain 260 435 IPR036865 -
Lele28g0159 462 SMART CRAL_TRIO_N_2 220 245 IPR011074 -
Lele28g0159 462 PANTHER GH16843P 183 450 - -
Lele28g0159 462 Pfam CRAL/TRIO domain 277 419 IPR001251 -
Lele28g0159 462 Gene3D - 166 457 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0159 Lele-ChrLele28 910563 919914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0159 218 414 Acyl Lipid Metabolism Gene Families AT1G55840 25.714 3.81e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0144 25 889622 890798 Lele28g0159 28 910563 919914 hybridization
Lele26g0159 26 903166 908332 Lele28g0159 28 910563 919914 hybridization