Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0156 ATGCCGTTGTCATCAGTTCCAGCTCGTCTTACGCTTCTCGCCCTTTTCTCTGCCACCACCTTCTATTGTCTGTACAAATCTCGCCGCCTCAGACACTTGAAACTTCCCCTATATCATAAACGCGCTATTCCCAATACCAGAGGGAAGATTCTCTTCGTTTCTCAAACAGGTACTTCTAAATCCCTTGCTCAGCGTCTTCACCAGCTGTTGGAGGCCAACGACCTCGATTTCGGCATCGTCGACCCCAGTGACTACGAACCTGAAGACCTTCCTAAAGAGACTCTGGTCCTCATCGTAGCTTCAACCTGGGAAGATGGAAAACCACCTCCAACTGCCAAATTCTTTGCAACTTGGCTCGCTGAAAGTGCCAAGGATTTTAGGGTGGGCTCTTTGTTGCTTTCACGGTGCAAATTTTCTATATTCGGCGTTGGAAGTCGAGCTTATGGAGCCACCTTTAATGCTGTTGCAAGGGATTTGGGAGAGCAGATGAGGGCGTTGGGGGCGACGGAGATGCTTCCCGTGTGTGAAGGAGATGTCGACACAGGTGATATAGATGGGGTTTTCGATCTTTGGTGTGCGAAGGTGGTTAGCTTTTTGAAGGGTGCTGTTTTAGAAAATGGCGGGGTTTTTGAGTCCAATGTCGATGGGCATTACGAAGAGGATTCAGATGAAGAAAACGGTATGGAGTCGGAGATTGTTGATCTTGAGGACATTGCGGGTAAAGCTCCTACGAGGAAGTCGGCGCCAGTAGGTGAAACTAATGGGAAATTGGACGGCAAAAGAGAAATGGTTACTCCAGTGATTAGAGCGAACTTAGAAAAGCAGGGATACAAAATTATTGGTTCACACAGTGGTGTTAAAATTTGTAGATGGACCAAGTCACAACTTCGAGGTCGAGGAGGTTGCTACAAGCACTCATTTTATGGCATAGAGAGTCATAGGTGTATGGAGGCAACCCCTAGTTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGAAGAAGTTGGCAGTGGAAGATGGATGATCCAATAGAAATTGTAAATTCTGCAATAGACCTACATAAAAATATGATTAAGCAAATGAAAGGAGTCCCTGGGGTCACCTTGGAGCGATTATCTGAAGGTCTCTCTCCTCGCCATTGTGCATTATCGCTTGTTGGAGAACCTATCATGTATCCAGAGATCAACACGCTTGTAGATGAGCTGCATAAACGGCGGATTTCTACATTTCTAGTGACAAATGCACAGTTTCCAGAGAAGATTAAGTTACTGAAGCCTGTCACCCAGTTATATGTCAGCGTAGATGCTGCTACAAAGGATGCTTTGAAGGCAATAGATAGGCCACTTTTTGGAGATTTCTGGGAACGATTCATTGATTCCTTGACTGCTTTAAAGGAGAAAGAGCAGAGAACTGTTTATCGTTTGACCCTGGTTAAAGGTTGGAACACAGATGAAGTGGATGCTTATTCAAAGCTCTTTAGTATAGGAAAACCTGACTTTGTAGAAATCAAGGGAGTCACATATTGCGGCTCATCTGCAACATCAAAGTTGACTATGGAAAATGTCCCCTGGCATACTGATGTCAAAGCTTTCTCAGAGGCATTGGCTCGGAAAAGCCAAGGGGAGTATGAAGTTGCCTGTGAGCATGCTCACTCATGTTGTGTCCTCCTGGCGAAAACTGAGAAATTCAAGATTGATGGCTTATGGTACACGTGGATAGACTATGAGAAATTTCATGACCTGGTGGCTTCTGGGAGAAGTTTTAATAGCAGAGATTACATGGCTGCCACGCCATCCTGGGCCGTCTATGGAGCAGAGGAAGGTGGATTTGATCCTGGACAATTGAGATATAGGAAAGAGCGACATCATAAATCAAGCCGGTGA 1905 0.4535 MPLSSVPARLTLLALFSATTFYCLYKSRRLRHLKLPLYHKRAIPNTRGKILFVSQTGTSKSLAQRLHQLLEANDLDFGIVDPSDYEPEDLPKETLVLIVASTWEDGKPPPTAKFFATWLAESAKDFRVGSLLLSRCKFSIFGVGSRAYGATFNAVARDLGEQMRALGATEMLPVCEGDVDTGDIDGVFDLWCAKVVSFLKGAVLENGGVFESNVDGHYEEDSDEENGMESEIVDLEDIAGKAPTRKSAPVGETNGKLDGKREMVTPVIRANLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGRSWQWKMDDPIEIVNSAIDLHKNMIKQMKGVPGVTLERLSEGLSPRHCALSLVGEPIMYPEINTLVDELHKRRISTFLVTNAQFPEKIKLLKPVTQLYVSVDAATKDALKAIDRPLFGDFWERFIDSLTALKEKEQRTVYRLTLVKGWNTDEVDAYSKLFSIGKPDFVEIKGVTYCGSSATSKLTMENVPWHTDVKAFSEALARKSQGEYEVACEHAHSCCVLLAKTEKFKIDGLWYTWIDYEKFHDLVASGRSFNSRDYMAATPSWAVYGAEEGGFDPGQLRYRKERHHKSSR 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0156 634 SUPERFAMILY Flavoproteins 47 199 IPR029039 -
Lele28g0156 634 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 251 580 - -
Lele28g0156 634 Pfam Radical SAM superfamily 320 498 IPR007197 GO:0003824|GO:0051536
Lele28g0156 634 Gene3D - 26 206 IPR029039 -
Lele28g0156 634 ProSiteProfiles Flavodoxin-like domain profile. 48 196 IPR008254 GO:0010181
Lele28g0156 634 Pfam Flavodoxin 50 189 IPR008254 GO:0010181
Lele28g0156 634 CDD Radical_SAM 320 496 - -
Lele28g0156 634 SFLD tRNA wybutosine-synthesizing 260 570 IPR034556 GO:0008033|GO:0051539
Lele28g0156 634 PRINTS Flavodoxin signature 49 62 IPR001094 GO:0010181
Lele28g0156 634 PRINTS Flavodoxin signature 160 179 IPR001094 GO:0010181
Lele28g0156 634 PRINTS Flavodoxin signature 135 145 IPR001094 GO:0010181
Lele28g0156 634 PRINTS Flavodoxin signature 97 108 IPR001094 GO:0010181
Lele28g0156 634 SUPERFAMILY Radical SAM enzymes 321 501 - -
Lele28g0156 634 Gene3D Aldolase class I 250 577 IPR013785 -
Lele28g0156 634 Pfam Wyosine base formation 503 566 IPR013917 -
Lele28g0156 634 SFLD Radical SAM 260 570 IPR007197 GO:0003824|GO:0051536
Lele28g0156 634 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 42 632 IPR034556 GO:0008033|GO:0051539
Lele28g0156 634 ProSiteProfiles Radical SAM core domain profile. 308 551 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0156 Lele-ChrLele28 884574 889321 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0141 25 871988 876843 Lele28g0156 28 884574 889321 hybridization
Lele26g0156 26 880267 891139 Lele28g0156 28 884574 889321 hybridization