Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0146 ATGGCTGAGGCGCTAGACAATGACACTCTTGAAAGTGTCAAGCCTTCCACTGAACAGGATATTTCGGATGAGTTAGATCTGAAAATAAAGAAGTATCTGAGAGGAGAAGGTGCGAATTTGGAGGTTTTGAGAGACAAAAAACTGAAGGGCCAACTTTCTCTTAGAGAGGAGTTATATAGTAAATCAGCTAAAGTTGCCGCGAAGGCTGATAAGTGGCTTGCACCCAGTGAGGGAGGTTATCTAGAGGCAGAAGGCATAGAGAAGACATGGAGGATCAAACAAGAGGCAATAGCTAAAGAAGTAGATATCTTGAGCTCAAGAGACCAATATGATATTATTTTACCAGAACTTGGTCCGTACACTTTGGAGTTTACTTCAAGTGGACGGTATATGGCTATTGGAGGACGTAAGGGCCATTTGGGAATTGTGGACTTGATAAATATGAGCTTAATCAAAGAATTTCAGGTTAGAGAAACAGTCCGTGATGTGACATTCTTGCATAATGAGCTGTTTCTTGCTGCTGCGCAGAAAAAGTATACTTACATCTATGACCGTGCTGGCACTGAGCTTCACTGCCTTAAGGAACATGGTTCCGTGTTAAGGCTTCAGTTTCTAAAAAGCCACTTCCTTCTGACTTCAATAAACAAGTTTGGGCAGCTGCATTATCAGGATGTTACGACGGGTACAATGGTTGGTAATATTCGAACTGGTTTAGGTCGTACTAATGTGATGCAAGTGAACCCCTTCAATGGGGTTGTTGCTTTGGGTCATTCAGGCGGGATGGTCACAATGTGGAAACCTACAAGCTCAGCTCCTCTTGTCAAGATGTTGTGTCATCATGGTCCTCTCTCAGCTCTGGCATTTCACTCAAATGGCCACTTAATGGCCACAGCTGGAAAAGACAAAAAAATAAAGCTTTGGGACTTGAGGAAATTTGAGGTTCTCCAGACACTACCTGGCCATGCCAACACCTTGGATTTTAGTCAAAAAGGATTACTTGCATGTGGTACTGGATCTTCCATACAGGTTCTGGGTGATCTTACTGGTTCGCAGAATTATTCGAGGTATATGTCTCATTCCATGGTTAAAGGTTACCAAATAGCAAAGTTAATGTTTCGACCGTATGAAGATGTTCTAGGCGTAGGGCATTCCATGGGTTGGTCCAGCATTCTCATTCCAGGATCGGGAGAACCTAACTTTGATACATGGGTGGCTAATCCATTTGAATCATCCAAACAGAGGAGAGAGAAAGAAGTTCGCTCACTGTTGGATAAACTGCCGCCTGAGACGATCATGTTGGACCCAAGCAAAATCGGTACAGTAAAGCCTACACCGAGAGAGAAGATGACAAAGAAGGAGAGGGAGACAGAGATAGAAGCTGCTGTTGAAGCTGCCAAGGAAATTAAAATGAAGAAAAAAACTAAAGGAAGAAGTAAACCAAGCAAGATGACCAAGAAAAAGAAGGAAGCAATTGAGAAAGTGAAGAGGCCTTTCTTGGAAGAAAATCTTAAGGAGGAAGCATTTTCCAGAAAGAAACAAAAAATCAGCGAGGAAGCTAGTTTACCAGAATCATTAAAGAGGTTTGCTGGGAGAAAACCAGCAACATGA 1608 0.4254 MAEALDNDTLESVKPSTEQDISDELDLKIKKYLRGEGANLEVLRDKKLKGQLSLREELYSKSAKVAAKADKWLAPSEGGYLEAEGIEKTWRIKQEAIAKEVDILSSRDQYDIILPELGPYTLEFTSSGRYMAIGGRKGHLGIVDLINMSLIKEFQVRETVRDVTFLHNELFLAAAQKKYTYIYDRAGTELHCLKEHGSVLRLQFLKSHFLLTSINKFGQLHYQDVTTGTMVGNIRTGLGRTNVMQVNPFNGVVALGHSGGMVTMWKPTSSAPLVKMLCHHGPLSALAFHSNGHLMATAGKDKKIKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGTGSSIQVLGDLTGSQNYSRYMSHSMVKGYQIAKLMFRPYEDVLGVGHSMGWSSILIPGSGEPNFDTWVANPFESSKQRREKEVRSLLDKLPPETIMLDPSKIGTVKPTPREKMTKKERETEIEAAVEAAKEIKMKKKTKGRSKPSKMTKKKKEAIEKVKRPFLEENLKEEAFSRKKQKISEEASLPESLKRFAGRKPAT 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0146 535 MobiDBLite consensus disorder prediction 434 455 - -
Lele28g0146 535 FunFam U3 small nucleolar RNA-associated protein 7 108 390 - -
Lele28g0146 535 MobiDBLite consensus disorder prediction 485 525 - -
Lele28g0146 535 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Lele28g0146 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Lele28g0146 535 MobiDBLite consensus disorder prediction 468 535 - -
Lele28g0146 535 SUPERFAMILY WD40 repeat-like 116 383 IPR036322 GO:0005515
Lele28g0146 535 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Lele28g0146 535 PANTHER WD-REPEAT PROTEIN BING4 11 529 IPR040315 -
Lele28g0146 535 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Lele28g0146 535 SMART WD40_4 311 345 IPR001680 GO:0005515
Lele28g0146 535 SMART WD40_4 227 266 IPR001680 GO:0005515
Lele28g0146 535 SMART WD40_4 105 144 IPR001680 GO:0005515
Lele28g0146 535 SMART WD40_4 147 184 IPR001680 GO:0005515
Lele28g0146 535 SMART WD40_4 269 308 IPR001680 GO:0005515
Lele28g0146 535 Gene3D - 117 211 IPR015943 GO:0005515
Lele28g0146 535 Gene3D - 212 344 IPR015943 GO:0005515
Lele28g0146 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Lele28g0146 535 SMART BING4CT_2 355 435 IPR012952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0146 Lele-ChrLele28 836562 841041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0146 169 344 U-box Gene Family AT1G04510 25.532 1.19e-10 62.0