Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0138 ATGGATAGGATTGACTCCGATATAAGAAGGGCCCACGTCTCCGTTCGTGCCCTTGTCGGGAGTGAACCCGCTCCTAAGTTACTGTGTGAAGAACAGCCTCCCCCATCCCCTGAACTCAAGGTGTTGCTTCATTCATTCATTCGTACAAATTCCAAATGTCTCACTCTGCCTTGTATCATTTGTCCTTCAATTCTGAAACGACGTCTCCCTGAAATCATGCTCCTGGCTACCTTCTACTTTAGTGAACATGGACTAATCTACGAAGGGGTGACTGAATCCTCAGAAATATCAGATATATATCCATCATTACCTACTCCTTTTGATCATTTTCCTATGTTCCCATTTCGAAACCACTCGCTAGTCACTCTTCCACCATACAAGTGGGCCTTTACACATTATGATTACAGGCCTCCACGATTTGATCGCCATTCCCTAGTTTTATCTCATCGTTCCTCACTCTTATCTCGTAGTCTTTTGCTTTCTCCGAGACCTTGGCTTCGAATTGTTCTTTATGTTAATATGAACAATGTCAACTGGGTACTTAATAAAAATCCATTATCAATTAGTGATTCACGTTTTGAATGTGTTAGTCCAATCATAATGCCTTTCAAAGAATTTGTGCGTGAGCTCAGGGATATTCGAGATGGCATGGGAAATATTTCTATAAGAGGGGTGGAAGCAAATCGCATCCCTAGCCGTGGAAGATCTCTTATTGTCCCTGAATTCTCCTCACCTGCTTCGTTAGTGACTCAGCAGAGCCCCTGGGCTAACTTACCATCTGAGTTGTTATTAGACATAATTCAGATGGTGGAAGCAAGCGAAAATTCCTGGCCTGCCCGGCGGGCGGTTGTAGCTTGTGCCTCAGTTTGTAGGTCATGGAGGAAGATAACAGAGGAGGTGGTCAAGACACCAGAACAGTGTGGTTGGCTTACCTTCCCCATATCGCTGAAGCAGTGTTTTATAAAGAGAGAAACGGCGACTTCGAAATATCTTTTATATCTTGGTCTAAGTCCAGCTCTCTCTGGGGATATGAGTAAACTCCTACTGGCAGCAAAGAAGATTAGACGGACATGTACAGAGTTTGTAATATCCTTGGTTGCAGATGATTTTTCTAAAGCAAGCATTACTTACGTTGGAAAGCTGAGGTCTAATTTTCTAGGTACCAATTTCATGATCTTGGATGGTCAACTCCCGCTTGATTCTTCCCTTCCGTTGAATAGTAAATGGCAGCAAAGAATCCATTCAAAGCAAGTTCTTCCAAGGGCTGCTGTAGAAAAGCATAATGTGGCCACGGTATCATATGAGCTCAATGTTCTCCGCACAAGAGGTCCAAGGAGAATGAGGTGCGCCTTGCATTCAATTCCAGTGGCTTCCATCCAAGAAGGGGGCACTGCTCCTACTCCTTTGAAGTTTACTAGATGCCCGAATGAGCATTTAACTTCCACGCCCATTTCAAAAGAAAGAAAGCCAGGAGAAGAGTGGGGCTCCAATAGCGAAGATAAGCCCCCAGAATCGAACCACATTACAAGGGAGCCACTGATTATGAAAAACAAAGCTCCTAGATGGCACGAACAATTGCAATGTTGGTGCTTGAATTTCAAGGGACGTGTTACGGTGGCCTCAGTAAAGAACTTCCAGCTCGTAGCTGTTGCAGAACCTCAACAAAATGTTTCAGCGGCAGAACAGGATAGAGTGATACTACAATTTGGGAAAATTGGAAAGGATATATTCACGATGGATTATCGTTATCCCCTCTCTGCATTTCAAGCCTTCGCGATCTGCTTGAGCAGCTTTGACACCAAACCTGCTTGCGAGTGA 1818 0.4417 MDRIDSDIRRAHVSVRALVGSEPAPKLLCEEQPPPSPELKVLLHSFIRTNSKCLTLPCIICPSILKRRLPEIMLLATFYFSEHGLIYEGVTESSEISDIYPSLPTPFDHFPMFPFRNHSLVTLPPYKWAFTHYDYRPPRFDRHSLVLSHRSSLLSRSLLLSPRPWLRIVLYVNMNNVNWVLNKNPLSISDSRFECVSPIIMPFKEFVRELRDIRDGMGNISIRGVEANRIPSRGRSLIVPEFSSPASLVTQQSPWANLPSELLLDIIQMVEASENSWPARRAVVACASVCRSWRKITEEVVKTPEQCGWLTFPISLKQCFIKRETATSKYLLYLGLSPALSGDMSKLLLAAKKIRRTCTEFVISLVADDFSKASITYVGKLRSNFLGTNFMILDGQLPLDSSLPLNSKWQQRIHSKQVLPRAAVEKHNVATVSYELNVLRTRGPRRMRCALHSIPVASIQEGGTAPTPLKFTRCPNEHLTSTPISKERKPGEEWGSNSEDKPPESNHITREPLIMKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAVAEPQQNVSAAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0138 605 ProSitePatterns Tub family signature 1. 533 546 IPR018066 -
Lele28g0138 605 PRINTS Tubby superfamily signature 361 377 IPR000007 -
Lele28g0138 605 PRINTS Tubby superfamily signature 377 401 IPR000007 -
Lele28g0138 605 PRINTS Tubby superfamily signature 426 453 IPR000007 -
Lele28g0138 605 PRINTS Tubby superfamily signature 515 532 IPR000007 -
Lele28g0138 605 PRINTS Tubby superfamily signature 583 605 IPR000007 -
Lele28g0138 605 PRINTS Tubby superfamily signature 562 581 IPR000007 -
Lele28g0138 605 PRINTS Tubby superfamily signature 533 549 IPR000007 -
Lele28g0138 605 Pfam Tub family 317 600 IPR000007 -
Lele28g0138 605 Gene3D Tubby Protein; Chain A 313 605 IPR025659 -
Lele28g0138 605 SUPERFAMILY F-box domain 251 316 IPR036047 GO:0005515
Lele28g0138 605 SUPERFAMILY Tubby C-terminal domain-like 304 605 IPR025659 -
Lele28g0138 605 Gene3D - 249 301 - -
Lele28g0138 605 PANTHER TUBBY-RELATED 249 603 - -
Lele28g0138 605 MobiDBLite consensus disorder prediction 482 507 - -
Lele28g0138 605 MobiDBLite consensus disorder prediction 467 511 - -
Lele28g0138 605 Pfam F-box domain 255 300 IPR001810 GO:0005515
Lele28g0138 605 ProSitePatterns Tub family signature 2. 590 605 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0138 Lele-ChrLele28 802305 808543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0138 220 605 TUB Transcription Factor Family AT1G47270 57.213 7.46e-145 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele28g0138 Tub 5.5e-94 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0127 25 795302 797283 Lele28g0138 28 802305 808543 hybridization