LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g0112	ATGCTGAAGTCAGGGATGGGAATTGAGGAACGCAAGCAGGTGAAACGGCCTTCCCAGGCCAGCTCTCGAAAAGGTTGTATGAGAGGCAAAGGAGGCCCTGAGAACGCCAGCTGCACCTACAAAGGCGTCCGTCAGAGGACTTGGGGCAAATGGGTCGCCGAAATCCGCGAGCCCAATCGCGGCGCTCGTCTCTGGCTCGGCACCTTCGACACTTCCCATGAAGCCGCTCTGGCTTACGACGCCGCCGCCCGTAAGCTCTACGGATCCGAGGCCAAGGTCAATCTCCCCAACCTCTCTCTCAATCCTCATCCGCCTCATTCGTTTGCCCCCTTTCAGATTCCTCCAATGGTAACCGGTCACCAGCCTCTGCCAGATCATCAGCTGCTCCACAACTCTGCCGCTAACATCCCCTGCTCTTTCAACGCCATCCCCAATAATGCTCCTATGATGCCCATGGCTTCTCATCAGCAAGTTGCACCAGTGTATAGCCCTTACTCTAGCTCTACCATGTCCGTTCCCTTCAACGCGGCCGAGGAGAACAACATGATGAATCCGATGGAGAAGGAGCAGGATTTCGATCAATTCTGGGGGACGATGAACGAGGGCCTCCCCGTTCCTGAGTTCGACGATTCAATCTGGGCCGAAGCTGCCATGTCTCTGGATTTCCCGGTAATGTCTGATGCCAGCATATATGCGAGTGGCACTCTGGGAGATGTGGCTCCATGGGACTCTCTGCAAACTCCCTGGTGCATGTGA	756	0.5595	MLKSGMGIEERKQVKRPSQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAALAYDAAARKLYGSEAKVNLPNLSLNPHPPHSFAPFQIPPMVTGHQPLPDHQLLHNSAANIPCSFNAIPNNAPMMPMASHQQVAPVYSPYSSSTMSVPFNAAEENNMMNPMEKEQDFDQFWGTMNEGLPVPEFDDSIWAEAAMSLDFPVMSDASIYASGTLGDVAPWDSLQTPWCM	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g0112	251	FunFam	Ethylene-responsive transcription factor 2	38	97	-	-
	Lele28g0112	251	MobiDBLite	consensus disorder prediction	1	17	-	-
	Lele28g0112	251	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Lele28g0112	251	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	13	183	-	-
	Lele28g0112	251	Gene3D	AP2/ERF domain	39	97	IPR036955	GO:0003700\|GO:0006355
	Lele28g0112	251	MobiDBLite	consensus disorder prediction	1	38	-	-
	Lele28g0112	251	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Lele28g0112	251	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Lele28g0112	251	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Lele28g0112	251	CDD	AP2	38	98	IPR001471	GO:0003700\|GO:0006355
	Lele28g0112	251	SUPERFAMILY	DNA-binding domain	39	96	IPR016177	GO:0003677
	Lele28g0112	251	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g0112	Lele-ChrLele28	679844	680599	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g0112	15	110	AP2-EREBP Transcription Factor Family	AT1G75490	80.208	1.10e-49	160

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele28g0112		AP2	1.4e-15	CL0081