Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0093 ATGGCTTTCGTCGAAGATAAGATTAAAACCGGAGGATTAATTGTTGGGGGCCAACCTCTAGCTGCTGAGATGAAGATGTTGAAAGAAATGCAGGATCAATATGGGATCCGAAAGAGTATAAATTCCGAGTTATGGCATGCTTGCGCTGGTCCACTCGTAAGCTTGCCTCAGGTGGGGAGTCTGGTGTATTACTTCCCTCAGGGGCACAGTGAACAGGTGGCGGCTTCCACTAGAAGAACAGCAACCTCACAGATTCCAAACTATCCGAATCTTCAATCTCAGTTGCTTTGCCAAGTTCAAAATGTTGCACTTCATGCAGATAGAGACACGGACGAAATATACGCTCAAATGAGTCTCCAACCATTGAATTGTGAAAAAGATGTCTTTCCTATATCTGATTTTGGTATGAAGCCTAGTAAACATCCAAGTGAATTTTTCTGCAAAACTTTGACTGCTAGTGATACAAGCACGCACGGTGGCTTTTCTGTACCTCGCAGGGCGGCAGAAAAGCTCTTTCCTCAGTTGGATTATACCATTCAACCCCCAACACAAGAACTCGTTGTCCGAGACTTACATGATAATACCTGGACATTCCGACATATATACCGAGGTCAGCCGAAGAGACATCTTCTCACAACAGGATGGAGTTTATTTGTTGGCTCAAAGAGGCTCAAAGCTGGCGATTCTGTTCTTTTTATCAGGGACGAGAAATCACAATTGCTAGTTGGTGTTAGGCGAGCAAATCGTCAACAGACAACATTGCCGTCATCTGTCCTTTCTGCTGATAGCATGCATATCGGTGTGCTAGCTGCTGCAGCTCATGCTGCTGCTAATCAGAGCCCGTTTACTGTTTTCTACAACCCAAGGGCATGCCCTTCAGAGTTTGTTATTCCGCTGGCTAAATACAGAAAAGCTGTATACGGTACCCAACTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGGAAGCGTAGGTATATGGGCACTTTTGTTGGTACCAGTGACTTGGATCCTTTGAGGTGGCCTGGTTCCAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAGAATAGAGTTAGTGCTTGGGAAATTGAGACTCCTGAAAGTCTTTTCATCTTTCCTTCTTTGACTTCGAGTCTGAAACGACCATTTCAATCTGGATCTTTTGGTACAGAAAATGAGTGGGGGCCTTTGTTAAGAAGGCCTTTTATACAAGTTCCTGAAAATGCAAATTTGGAGCTCCCAAACTCTTTACAAAATCTATATATGGAACACCTGATGAAAGTTCTTTTTAAACCTCAACTGGTGAACAATCCTGGAGCCTTTTCATCAGTCATGCATCAAGAATCTGCTGCCAAGAGTGATCTCTCACAAGATTTGAAGAAGACGCTTGCGACAGATAACCAAAAAGCTCGTATTGTATGTTCAGGGAGCATACCGCCAAAAAATCTAGATCATTCCCAATCTCTCCCTGACCAATCTAATGCTTTAAACTTGCATTCCCTGTTGAAAAGTGATCAAACTGGGAAATTGCTTCCTCTGCCTAAAATTGAGAATGCTCAATCTTCTGGAGCAGTTTCTGATAAAACAAAAGTAGAATCCGTGGAGTTAACTGATCATATTATTGACTGCCCTTCAATAGAAGGATGCAACGAGGAAAAAATGGTGGCGAACCCTATGAACCCACCAGGCCATGCGAGTCAAATGGCATTGTTTAATCAAAACCAGAGTCCATGGCCCGGGCAGCCTCAGTTCGAATCAACAATATCTCCTCAAATGGTTGATATTCCTCAATCTGATTATGCTCTTTTAAATGGCCTGCTTCCTCAGGCAGACGTCGATGAATGGATGTGCCAATCTTTCCCTGGATTGAGTAGATCGGTTGGGCCTTTGCAAGAACAGTCTCCACTTCTGCCACAAGCAGTTAATAGCCCTTTACCCCCCGTGAGCCAAGATGCGTGGGATCATTATCTCAAAAATTTCAAGTCCTCACCTCAAGCGGACCAGTTAACACCCATCTCACAGCAAGGGTTGCAGAACTTTAATTCAAACAATCTGAGGGATCTGTCTGCTGAGAGCATTAACCAAAGCAGTGTGTATACTAGTGTCAATTTTGATGCCAGTAACAGTGTAAGTACTATGGTTGATCCTTCTACTTCGAGTACCATTTTGGATGATTTTTGCTCGTTGAAGGATGGCGAATTCCAGAACCCATCAGATTGCATGCTTGGCAACATAAGCTCGAGCCAGGACGTCCAGTCTCAGATAACCTCCGCAAGTCTTGCTGATGCACATGTTTTCTCTCTGCAAGACAACTCAGGTGGTGGTACATCTTCAAGCCACGTTGATTTCGATGAAAGCAGCTTTCTGCAGAATAACTCATGGGCGCAAGTTGCTGCACCCGTGCGAACCTACACCAAGGTTCAGAAGGCAGGGTCAGTAGGAAGATCGTTGGATGTAACCACTTTTAAGAACTACGAGGAGCTGATCTCCGCAATTGAACGGATGTTTGGACTTGAGGGTCTGCTGAACGACACCAAAGGTTCAGGATGGAAATTGGTATATGTAGATTATGAAAATGATGTTCTGCTTGTCGGGGATGATCCTTGGGAGGAATTCGTGGGATGTGTCCGGTGCATCAGGATTTTATCGCCAGTGGAAGTAAAACAGATGAGCGAGGAGGGAATGAAGCTTCTAAACAGTGCTGCGGGGCAACAGTTGAATGGACCCATGTCAGGTGGCTGCCCTTAG 2784 0.4476 MAFVEDKIKTGGLIVGGQPLAAEMKMLKEMQDQYGIRKSINSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLQSQLLCQVQNVALHADRDTDEIYAQMSLQPLNCEKDVFPISDFGMKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPQLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANQSPFTVFYNPRACPSEFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTFVGTSDLDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSAWEIETPESLFIFPSLTSSLKRPFQSGSFGTENEWGPLLRRPFIQVPENANLELPNSLQNLYMEHLMKVLFKPQLVNNPGAFSSVMHQESAAKSDLSQDLKKTLATDNQKARIVCSGSIPPKNLDHSQSLPDQSNALNLHSLLKSDQTGKLLPLPKIENAQSSGAVSDKTKVESVELTDHIIDCPSIEGCNEEKMVANPMNPPGHASQMALFNQNQSPWPGQPQFESTISPQMVDIPQSDYALLNGLLPQADVDEWMCQSFPGLSRSVGPLQEQSPLLPQAVNSPLPPVSQDAWDHYLKNFKSSPQADQLTPISQQGLQNFNSNNLRDLSAESINQSSVYTSVNFDASNSVSTMVDPSTSSTILDDFCSLKDGEFQNPSDCMLGNISSSQDVQSQITSASLADAHVFSLQDNSGGGTSSSHVDFDESSFLQNNSWAQVAAPVRTYTKVQKAGSVGRSLDVTTFKNYEELISAIERMFGLEGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPVEVKQMSEEGMKLLNSAAGQQLNGPMSGGCP 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0093 927 Gene3D - 810 903 - -
Lele28g0093 927 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Lele28g0093 927 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele28g0093 927 CDD B3_DNA 145 246 IPR003340 GO:0003677
Lele28g0093 927 SUPERFAMILY DNA-binding pseudobarrel domain 134 275 IPR015300 -
Lele28g0093 927 ProSiteProfiles PB1 domain profile. 814 898 IPR000270 GO:0005515
Lele28g0093 927 Gene3D - 310 382 - -
Lele28g0093 927 FunFam Auxin response factor 310 382 - -
Lele28g0093 927 Gene3D - 144 247 IPR015300 -
Lele28g0093 927 FunFam Auxin response factor 810 903 - -
Lele28g0093 927 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Lele28g0093 927 Pfam AUX/IAA family 811 899 IPR033389 -
Lele28g0093 927 SUPERFAMILY CAD & PB1 domains 817 893 - -
Lele28g0093 927 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 904 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele28g0093 927 SMART B3_2 146 248 IPR003340 GO:0003677
Lele28g0093 927 FunFam Auxin response factor 144 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0093 Lele-ChrLele28 528898 533988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0093 20 923 B3 DNA Binding Superfamily AT1G19850 60.065 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele28g0093 AUX_IAA 2.6e-10 CL0072