Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0085 ATGGCTCCCCTTACTTCCTTGCCCGACCAGTCAGGCCATTCAGACCCCAACTCACAAGTCCCAAAATGCAGGCGAAATAAGCCGCAGAAGAAGCAGATGCAGAAACCACCGTCTTCATGGGACCAAATCAAGAATCTCCTCACCTGCAAACAGATCCAAGGGTCCAGAGTTCACGACCCCTCCAAAAAGCCCACCCAGGTGGCCTACTCCAAGCTAGGATCTTCTTGCAGCTCCATCTGTAGCTTCAAGGACGTTGTTCACAGCAACACGCGTGTTTTTCACAGACCCGATAACTCCTCGCCGGAGAGCAGCGCTCTCGGTCATCAGACCGGGTTACTGAGCCGGAAGCCTCCGAATAACTCTTCATCTCGGCCGCCCAAATCCAAAGTCGCTCCAAACTGCACCACATCTTCCAGAGGGATGCAATTCAGGAAACTCTCGGGCTGTTACGAATGTCGCATGATTGTTGACCCTTCCAGGCTCCCGATTCCGAGAAGCACTCTATGTTCTTGCCCTCGCTGTGGAGAGGTCTTCCCTAAGATGGAAAGCTTGGAGCTTCATCAAGCTACTCGCCACGCCGTTTCAGAGCTGGGCCTGGAGGATTCGGGTAGAAATATTGTGGAGATAATATTCAAATCAAGCTGGCTGAAGAAGGGCAGCCCCATCTGTAAGATCGAACGGATACTTAAGGTCCACAACACCCAGCGCACCATCCAACGGTTCGAGGAGTGCCGAGACGCGGTGAAGAGCCGTGCTCAGTTCAGCGTCAAGAAGAACCCCAGGTGCGCCGCCGACGGCAACGAACTCTTGCGATTCCACTGCACCAGCTTGTCATGCTCCTTGGGCGCACGTGGCTCCTCCTCCTTGTGCGGCTGCCTCCCCGGCTGCGGTGTTTGCACCATCATCCGCCATGGATTCCTGGGCAAGTCCGAAAGTGCCGGCGCCGCTGAACAGCCACACTGCAAAGGAGTGAGGACCACGGCCAGCAGCGGTATTGCACACGGCGCCTTGCAGTGTAACGACACCAGGAGGGCGATGCTGGTGTGCCGCGTCATTGCCGGGAGGGTGAAGCGCGTGGCGGAGGAGGAGACAGTGTGGGCTGGGTCTTATGACTCGATAGCTGGCTGCGCCGGGATGTGCTCGAATCTCGAGGAGTTGGTAGTGTTCAATCCAAAGGCCATCCTTCCTTGTTTCGTTGTCATATACGAAGTGGTGCCATGTTGA 1224 0.5596 MAPLTSLPDQSGHSDPNSQVPKCRRNKPQKKQMQKPPSSWDQIKNLLTCKQIQGSRVHDPSKKPTQVAYSKLGSSCSSICSFKDVVHSNTRVFHRPDNSSPESSALGHQTGLLSRKPPNNSSSRPPKSKVAPNCTTSSRGMQFRKLSGCYECRMIVDPSRLPIPRSTLCSCPRCGEVFPKMESLELHQATRHAVSELGLEDSGRNIVEIIFKSSWLKKGSPICKIERILKVHNTQRTIQRFEECRDAVKSRAQFSVKKNPRCAADGNELLRFHCTSLSCSLGARGSSSLCGCLPGCGVCTIIRHGFLGKSESAGAAEQPHCKGVRTTASSGIAHGALQCNDTRRAMLVCRVIAGRVKRVAEEETVWAGSYDSIAGCAGMCSNLEELVVFNPKAILPCFVVIYEVVPC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0085 407 Gene3D - 187 404 - -
Lele28g0085 407 MobiDBLite consensus disorder prediction 1 23 - -
Lele28g0085 407 ProSitePatterns Zinc finger C2H2 type domain signature. 169 192 IPR013087 -
Lele28g0085 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 197 IPR013087 -
Lele28g0085 407 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 38 402 - -
Lele28g0085 407 SUPERFAMILY ADP-ribosylation 194 403 - -
Lele28g0085 407 MobiDBLite consensus disorder prediction 93 136 - -
Lele28g0085 407 MobiDBLite consensus disorder prediction 1 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0085 Lele-ChrLele28 466923 469091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0085 1 405 C2H2 Transcription Factor Family AT1G75710 59.267 2.19e-161 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele28g0085 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0074 25 432841 435072 Lele28g0085 28 466923 469091 hybridization
Lele26g0086 26 465776 467922 Lele28g0085 28 466923 469091 hybridization