Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0060 ATGATCCAATGGCTTCAAGCAACACGCCAACAACGCTTTCTTTCTCTCAAATTCCTTCGGCCTTCGAGGGCCAACGCACCACCGTCCTTTGACATTCTCAAAGGAGAACCGAATCCTTCAAGCTCTCATAATCAAGTGGAAGGAAACCCGCAGGCAATAACTGCAGCCTCACTTGTGGGGATGGTACTTGGAGAAGAAGACGATGGTGGTAATTATGGTAAGAGATCGGCGGGTGTCTTTGATGGCAAAACGATGGCTAGAAAGTGGAAGGAGACGATTTTTGTAGATTATCTTCACAGAATGACCCTAGACGTGGAAATGAAAGATCACGCTACTCCCTCGCATTCTGTTTCTTCAGCTGTTCCATCCACTTTACAGCATTTGAAGGAAATAGCATCCCTTATTGAGAACGGTTCCTATTCAAAGGAGGTTCGCAGAATTGCTCGTGCTATTCGCCTTACAATTGCTCTGAGGCGGAAATTGACAACGTCGGTGCTCTCATCTTTTCTCGACCACATTCTCACTCCAGGTTCTGAGGCTCACGCCAGATTGTCCGCCTATGTTCCCAGGGAGGAAGATCGTGAGATGGAAGTGGATACTGCAACTTCTGCTGTTCAAGTCCCATGTAAACACCTACTGCCTGAACTGGAGATCTACTGCTACTTACTCGTACTACTGTTTCTTATTGATCAGAAAAGATACAACGAGGCCAAAAGCTGTTCCTCAGCAAGTATTGGTCGACTCAAGAATCTGAACAGAAGAACTGTTGATGTCATTGCTTCCAGACTATACTTCTATTACTCATACAGCTATGAACTTACAGGACACCTGGCTGAAATCCGGGGCAACCTCCTTGCTTTGCATCGGATTGCCACTCTCCGGCATGATGAGCTGGGTCAGGAAACACTTCTTAATCTTTTGCTTCGTAATTACCTCCACTACAACCTATATGACCAAGCCGAGAAGTTAAGGTCCAAGGCACCACGATTTGAAGCACATTCAAACCAGCAGTTCTGTCGTTATCTCTTCTACCTTGGGAAGATTCGTACCATACAGTTGGAGTATACCGATGCAAAAGAGTCACTCTTGCAGGCTGCCCGAAAAGCTCCAGTTGCAGCGCGAGGCTTTCATATTCAATGTAATAAGTGGGCTGTTATTGTGCGCCTGCTGTTGGGAGAAATACCTGAAAGGACTATCTTTATGCAGAGAGGTGCGGAGAAAGCTTTGAGACCTTACTTTGAGCTTACAAACGCGGTGCGCATTGGTGATCTGGCATTGTTTAGGAATGCTGCAGAAAAGTTTGCTGACACATTTAATACAGATGGAACTCATAACTTGATTGTTCGGCTGCGACATAATGTTATCCGAACTGGTTTACGCAACATCAGTGTGTCTTATTCTCGCATCTCACTTGCTGATGTAGCTCAAAAATTGAGGTTGAGCTCTGCCAACCCTGTTGCAGATGCTGAGAGCATTGTAGCCAAGGCCATCCGCGATGGGGCAATTGATGCTACATTGGATCATGCTAACGGGTGGATGGTATCCAAGGAAACTGGAGATATTTACTCCACAAACGAACCTCAATTGGCTTTCAATTCTCGAATTGCCTTCTGTCTTAACATGCACAATGAAGGCATTAGGGCACTGCGTTTCCCACCTAATACACACAAGGAAAAGGAAAGTGCTGAGAAAAGGAGAGAGAGGCAACAACAAGAGCAAGAACTGGCCAAGCATATAGCAGAGGAAGATGACGACGATTTCTGA 1764 0.4575 MIQWLQATRQQRFLSLKFLRPSRANAPPSFDILKGEPNPSSSHNQVEGNPQAITAASLVGMVLGEEDDGGNYGKRSAGVFDGKTMARKWKETIFVDYLHRMTLDVEMKDHATPSHSVSSAVPSTLQHLKEIASLIENGSYSKEVRRIARAIRLTIALRRKLTTSVLSSFLDHILTPGSEAHARLSAYVPREEDREMEVDTATSAVQVPCKHLLPELEIYCYLLVLLFLIDQKRYNEAKSCSSASIGRLKNLNRRTVDVIASRLYFYYSYSYELTGHLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFHIQCNKWAVIVRLLLGEIPERTIFMQRGAEKALRPYFELTNAVRIGDLALFRNAAEKFADTFNTDGTHNLIVRLRHNVIRTGLRNISVSYSRISLADVAQKLRLSSANPVADAESIVAKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEGIRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0060 587 SUPERFAMILY "Winged helix" DNA-binding domain 446 521 IPR036390 -
Lele28g0060 587 Gene3D - 345 536 - -
Lele28g0060 587 SMART PINT_4 445 538 IPR000717 -
Lele28g0060 587 MobiDBLite consensus disorder prediction 27 47 - -
Lele28g0060 587 Pfam Proteasome regulatory subunit C-terminal 520 586 IPR013586 GO:0000502|GO:0030234|GO:0042176
Lele28g0060 587 MobiDBLite consensus disorder prediction 552 587 - -
Lele28g0060 587 Pfam PCI domain 411 516 IPR000717 -
Lele28g0060 587 MobiDBLite consensus disorder prediction 552 580 - -
Lele28g0060 587 Coils Coil 554 581 - -
Lele28g0060 587 FunFam 26S proteasome non-ATPase regulatory subunit 3 220 543 - -
Lele28g0060 587 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 445 538 - -
Lele28g0060 587 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 108 578 - -
Lele28g0060 587 ProSiteProfiles PCI domain profile. 339 520 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0060 Lele-ChrLele28 332220 336525 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0060 28 332220 336525 Lele01g1164 01 6925685 6933670 CCT
Lele28g0060 28 332220 336525 Lele02g1431 02 18609247 18613340 CCT
Lele28g0060 28 332220 336525 Lele03g1178 03 6899671 6906376 CCT
Lele28g0060 28 332220 336525 Lele04g1412 04 19471437 19475527 CCT
Lele01g1175 01 6999030 7003466 Lele28g0060 28 332220 336525 CCT
Lele02g1442 02 18691502 18695355 Lele28g0060 28 332220 336525 CCT
Lele03g1190 03 6973599 6978072 Lele28g0060 28 332220 336525 CCT
Lele04g1424 04 19551137 19554556 Lele28g0060 28 332220 336525 CCT
Lele25g0050 25 306720 309991 Lele28g0060 28 332220 336525 hybridization
Lele26g0061 26 335090 338293 Lele28g0060 28 332220 336525 hybridization