Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0052 ATGGGAGACACAGAGAGTTGCAGTAACAGCGGCCAGAATTTAGGGTGGAATAATAGTCGGAAGCAGAGTCAGAAGGTTGAAGTTTATAACGAGGTTCTTAGTAGACTTAAGGAATTGAATGTCCCGGAGGCTGCGGTTCCTGGCTTTGAGGATGATCTCTGGACGCATTTCTGTCGACTTCCAGCTAGGTATGCTGTAGATATGGACGTGGAGAGAGCTGAAGATGTCATTGTGCATAAAAGGTTGCTTCATATGGCACATGATCCCGCTACCAGACCTGCTGTTGAAGTCCGTCTAGTTCAGGTTCGATCTGCTTCTGGTGTGAATTCTAGTGATTCTCTTCATTCAAACTCACAAAGCAAAGCCAGTCATCAATATTCTCATATGACAGGCAACATGAGGCATGGTTATTTGAATATATTTACTGAAAAGCTAAATATCATTCATCTTGAACCGGCCTTTGGTTCCTCAGCTAACTTTGAACTTGCTCTTGAAGCAAGCCAGTTAAAAGTTCAATCTAATGGTGGCAATTCGAAATTCTATACACAATATTCCCGGAAAAACTTGGATAATGATTGTATTCTTCGAAATTCTTTTACCTATTTGTTCTATGAACATCACAAGTTCTGACCAATGCATGAGATCACGATATCAACAAATGACAAGCCAAAACTTCTCAGTCAGTTGACTTCCCTGCTGTCGGAAACTGGGTTGAATATCCAAGAAACACATGCTTTTTCAACATTGGATGGTTATTCATTGGATGTTTTTGTTGTTGGTGGCTGGCCTGTTGAGGAGACTGAGAAGCTTAAACATGTGCTGACAAGAAATATTCAGAAACTTGAGCAGCCCTTCAAGAAAATTGGCAGTCAAACTGCAGAGCAAGAACAAATCAAGATCAATTGTATCTCTAATAATGGGAATCTACCTTTATGTGGAAGCGTCGCCTGGGAAATCGATGCAAGCTGTTTGAAATATGAAAGGAAAATTGCATCTGGACCTTTCTTTGATTTATATAAAGGCGTTTTCTGTAACCAACAAGTAGGTATCAAAGTTCTCAAGACTGAGAATCTGAATGAAAATATACAAAGAGAGTTTGCTCAAGAGGTGTATATTCTGAGTAAATTGTGTCACAAGAATGTGGTGAAATTAGTGGGGGCTAGTACACAACTTCCAGACCTTTTCATTGTCACGGGTAAAATAGCAATCAATGTTTGTGAAGGAATGGACTATTTGCATCAGAATGACATCATACACAGGGACCTCAAAACCGGGAATCTTTTGATGGATGAGAATGGGGTGGTGAAGGTAGCAGATTTTGGTGTAGCAAGGGTGGAAGATCAGTCAGGCATCATGACTGCAGAAACTGGAACTTATAGATGGATGGCTCCAGAGGTTATTGAACACAAACCATATAATCACAAAGCCGACGTGTTCAGCTTCGGAATTACTCTGTGGGAGCTGCTGACGGGGAAGCTTCCGTATGAGCATTTGTCACCATTGCAAGCAGCAGTTGGAGTGGTCCACAAGGGGTGGAGACCCAAAGTTCCGAGGCATACACATCCAATGTTAGTAGAGTTGATGAACCGTTGCTGGTACCAAGACCCTTCTTTCAGACCCGAATTCTCAGAAATTCTGGAATTTCTGCGCCATTTTCCCCGTAATGTTCTGCTTCCCTTCTATGGTGGAAAATTTTCTCAAGCGAAAGGAAGAAGCAGGACTCATAGCAAAGGGCTTAGGCATTCTGCTTCCAAGTTAGAGATGGCAACGCCGGTTAAAGTGTACGGACCAACATTGTCCACGGCCGTGTCCAGGGTTTTGGTGTGTCTCATCGAGAAGGACGTCCAATTCCAGCTTGTTCCTCTTAACATGTCCAAAGGGGAGCATAAGAAGCCCGATTTCCTCAAGATTCACCCCTTTGGTCAAGTACCAGCATTCGAGGACGAGAGCATTTCCCTCTTCGAGTCGAGAGCGATATGCCGATACATTTCCGAGAAGCATCCGGAGAGGGGGAACAAGGCCCTGTACGGCACGAACCCGTTGGCGAAGGCGTCCATAGATCAGTGGTTAGAGGCGGAGGGGCAGAGTTTCAACCCGCCGACCTCAGTTCTGGTGTTTCAGCTCGCATTTGCTCCTCGAATGAAGATCAAACAAGACGAGGGAGCCATCGGTCTCAACGGAGAGAAACTAGCCAAAGTGCTGGATGTGTACGATAGTAGGCTTGGGGAGAGTCGCTTCTTGGCGGGCGATGAATTTTCTCTGGCGGACCTCTCTCACCTTCCCAACACACAATACTTGATGGGCACCGAGAAAGGCGAGCTGTTCACTTGCAGGAAGAATGTGTCCAGGTGGTGGTCAGAGATTTCCACTCGAGATTCCTGGAGACAGGTGGTCGATATGCAGAGCACTAAAAATTGA 2418 0.4479 MGDTESCSNSGQNLGWNNSRKQSQKVEVYNEVLSRLKELNVPEAAVPGFEDDLWTHFCRLPARYAVDMDVERAEDVIVHKRLLHMAHDPATRPAVEVRLVQVRSASGVNSSDSLHSNSQSKASHQYSHMTGNMRHGYLNIFTEKLNIIHLEPAFGSSANFELALEASQLKVQSNGGNSKFYTQYSRKNLDNDCILRNSFTYLFYEHHKFXPMHEITISTNDKPKLLSQLTSLLSETGLNIQETHAFSTLDGYSLDVFVVGGWPVEETEKLKHVLTRNIQKLEQPFKKIGSQTAEQEQIKINCISNNGNLPLCGSVAWEIDASCLKYERKIASGPFFDLYKGVFCNQQVGIKVLKTENLNENIQREFAQEVYILSKLCHKNVVKLVGASTQLPDLFIVTGKIAINVCEGMDYLHQNDIIHRDLKTGNLLMDENGVVKVADFGVARVEDQSGIMTAETGTYRWMAPEVIEHKPYNHKADVFSFGITLWELLTGKLPYEHLSPLQAAVGVVHKGWRPKVPRHTHPMLVELMNRCWYQDPSFRPEFSEILEFLRHFPRNVLLPFYGGKFSQAKGRSRTHSKGLRHSASKLEMATPVKVYGPTLSTAVSRVLVCLIEKDVQFQLVPLNMSKGEHKKPDFLKIHPFGQVPAFEDESISLFESRAICRYISEKHPERGNKALYGTNPLAKASIDQWLEAEGQSFNPPTSVLVFQLAFAPRMKIKQDEGAIGLNGEKLAKVLDVYDSRLGESRFLAGDEFSLADLSHLPNTQYLMGTEKGELFTCRKNVSRWWSEISTRDSWRQVVDMQSTKN 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0052 805 CDD GST_C_Phi 681 798 IPR034347 -
Lele28g0052 805 ProSiteProfiles Protein kinase domain profile. 324 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0052 805 Gene3D Transferase(Phosphotransferase) domain 1 398 572 - -
Lele28g0052 805 SUPERFAMILY ACT-like 212 281 IPR045865 -
Lele28g0052 805 Pfam Protein tyrosine and serine/threonine kinase 400 549 IPR001245 GO:0004672|GO:0006468
Lele28g0052 805 Pfam Protein tyrosine and serine/threonine kinase 324 398 IPR001245 GO:0004672|GO:0006468
Lele28g0052 805 CDD STKc_MAP3K-like 330 549 - -
Lele28g0052 805 ProSiteProfiles ACT domain profile. 214 293 IPR002912 -
Lele28g0052 805 Pfam Glutathione S-transferase, C-terminal domain 724 792 IPR004046 -
Lele28g0052 805 Pfam Glutathione S-transferase, N-terminal domain 591 664 IPR004045 -
Lele28g0052 805 SUPERFAMILY Protein kinase-like (PK-like) 310 549 IPR011009 -
Lele28g0052 805 SMART serkin_6 324 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0052 805 PANTHER GLUTATHIONE S-TRANSFERASE RHO 589 800 - -
Lele28g0052 805 SUPERFAMILY GST C-terminal domain-like 672 799 IPR036282 -
Lele28g0052 805 SUPERFAMILY Thioredoxin-like 591 671 IPR036249 -
Lele28g0052 805 Gene3D Glutaredoxin 589 677 - -
Lele28g0052 805 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 590 671 IPR004045 -
Lele28g0052 805 Gene3D - 678 798 - -
Lele28g0052 805 Gene3D - 212 283 - -
Lele28g0052 805 Gene3D Phosphorylase Kinase; domain 1 314 397 - -
Lele28g0052 805 SFLD Main (cytGST) 591 801 - -
Lele28g0052 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Lele28g0052 805 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 679 805 IPR010987 -
Lele28g0052 805 CDD GST_N_Phi 591 666 - -
Lele28g0052 805 PRINTS Tyrosine kinase catalytic domain signature 520 542 IPR001245 GO:0004672|GO:0006468
Lele28g0052 805 PRINTS Tyrosine kinase catalytic domain signature 457 467 IPR001245 GO:0004672|GO:0006468
Lele28g0052 805 PRINTS Tyrosine kinase catalytic domain signature 411 429 IPR001245 GO:0004672|GO:0006468
Lele28g0052 805 PRINTS Tyrosine kinase catalytic domain signature 476 498 IPR001245 GO:0004672|GO:0006468
Lele28g0052 805 SFLD Main.5: Phi-like 591 801 - -
Lele28g0052 805 FunFam Glutathione S-transferase F2 677 798 - -
Lele28g0052 805 FunFam Glutathione S-transferase F2 591 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0052 Lele-ChrLele28 294450 301787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0052 5 556 MAP Kinase Kinase Kinase AT4G35780 49.655 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lele28g0052 PK_Tyr_Ser-Thr 1.8e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0044 25 272224 273004 Lele28g0052 28 294450 301787 hybridization
Lele26g0053 26 296749 303357 Lele28g0052 28 294450 301787 hybridization