Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0051 ATGTCAGACCACCCAGTCCAGGCTCGTGCTCGGCGTTCACCTTATATGTCGCCGGCGGAGACCAACAGGGGATGGTGTGTGGAGGAAGGCAAGCATTACCCTTCCCCACTCGCGTCGCACGAGGACGTGGTCAAGGACCCCACCCTATTCTGGGACACTCTCAGGCGTTTCCACTTCCTCATGGGTACCAAGTTCATGATTCCCGTGATTGGAGGCAAGGAACTGGATTTGCACGTTCTTTATGTGGAGGTTACGAGGAGGAGTGGTTATGAGAAGGTGGTGGCAGAGAAGAAATGGAGGGAAGTGGGGAACGTGTTCAAGTTCTCTCCCACCACGACCAGTGCTTCGTTCGTACTGAGGAAACACTACTCGAGTCTTCTTTACCATTACGAACAAGTCCACTTCTTTAATGCTCGGGGTCCTCTGTACACCCCATCTGCAGCTGCATTTTCTGTCACCAACCAGTCATGGAGACCCGAATTAGCTATTGTGGAATACTCACCCCAGCGGATAAACGAGTGTCCCGAATCCCATGACGAAGATAATTGGGGCGGAGAGGTGAAGGGAATGATAGAGGGGAAATTCGACTGTGGGTATTTGGTGTCAGTGAAGGTGGGGACAGAGGTTCTGAGAGGGGTGCTTTACCATCCACAGCAATCGGAAACTCCGCAGAGTAGGAATGCGATGGTGGCCTACAATGGAAAAGGAGGGCGCGCGGGTAGGAGGAGGAGGAGCAGAAGGAGGTGGGACCCAAACTACCCGAAGCCCAACAGAAGTGGGTATAACTTCTTTTTTGCGGAGAAGCATTACAAGCTGAAAGCCCTCTATCCCAACAGAGAGAGGGAATTTACAAAGATGATCGGCCAGTCATGGAGCAGTCTTAGCTCCGAGGAGAGAATGGTATACCAGAGCATTGGGCTGAGAGACAAGGAAAGGTACAAGAGAGAGCTGAGGGAGTACAAGGAGAAAATGGAGCTCGCTCCCGCCGGCGGGCTTTCCAGTATTTAA 1008 0.5238 MSDHPVQARARRSPYMSPAETNRGWCVEEGKHYPSPLASHEDVVKDPTLFWDTLRRFHFLMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGNVFKFSPTTTSASFVLRKHYSSLLYHYEQVHFFNARGPLYTPSAAAFSVTNQSWRPELAIVEYSPQRINECPESHDEDNWGGEVKGMIEGKFDCGYLVSVKVGTEVLRGVLYHPQQSETPQSRNAMVAYNGKGGRAGRRRRSRRRWDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWSSLSSEERMVYQSIGLRDKERYKRELREYKEKMELAPAGGLSSI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0051 335 Pfam HMG (high mobility group) box 254 321 IPR009071 -
Lele28g0051 335 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 254 321 IPR009071 -
Lele28g0051 335 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 25 326 - -
Lele28g0051 335 SMART bright_3 45 136 IPR001606 GO:0003677
Lele28g0051 335 CDD HMGB-UBF_HMG-box 254 318 - -
Lele28g0051 335 SUPERFAMILY ARID-like 39 142 IPR036431 GO:0003677
Lele28g0051 335 MobiDBLite consensus disorder prediction 231 254 - -
Lele28g0051 335 SMART hmgende2 253 322 IPR009071 -
Lele28g0051 335 Gene3D - 36 140 IPR036431 GO:0003677
Lele28g0051 335 SUPERFAMILY HMG-box 251 324 IPR036910 -
Lele28g0051 335 ProSiteProfiles ARID domain profile. 44 135 IPR001606 GO:0003677
Lele28g0051 335 Pfam ARID/BRIGHT DNA binding domain 49 131 IPR001606 GO:0003677
Lele28g0051 335 SMART ARID_2 41 131 - -
Lele28g0051 335 CDD ARID_HMGB9-like 46 131 IPR045303 GO:0003677
Lele28g0051 335 Gene3D High mobility group box domain 238 328 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0051 Lele-ChrLele28 290132 292775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0051 31 326 ARID Transcription Factor Family AT1G76110 65.798 1.78e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele28g0051 ARID 7.2e-18 CL0123