Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0043 ATGGCAGGCCAGAGCTCTAACGATTGGCCCAGTGCTAGTAGTGTTTCAGCAGAATTGTCTGATTCAACTGTTCAGCTCAATATCAAGACTTTAGATTCCCACATATACAATTTTCAAGTGGATAAAAACATGCTAGTTTCATTGTTGAAGGACAAAATAGCCAATGAAGTTGGTGTTCCGGTAGGTCAGCAGCGGTTAATATTCAGGGGGAAAGTGCTGAAGGATAATCATGTTCTTTCTGAGTATCATATTGAGAATGGGGATACGTTGCATTTAGTTCAAAGGCAACTGAACCAGTCACAGGCTCCTGGTACCAGTTCTGGCGAAACAACTGGTACAAGTGGAAACCGAGGAAATGATGCAAGCTCTGGGGTGCTTCATAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTGGGGACCTTTAATGTGGGGGAACAAGGTGAAGGAATTGTTCCTGATCTTAGTCGGGTCATTGGGGCAGTTTTGAACTCTATTGGAATTGGTGGGCAGAGCACTGGTGGTGTTACAAATGGTACACAGTCTTCTTCAGCATCCTTTGTCAATCGTCTTAAATCTTTTAAACTCACTGGGTGTATTTCTTATCTGGAGCCAAATCCTTCTACTCGGGGTCCTTCTGGGAATGAAGCTGGGGGAATGCATCTTGAAAATCATAACCAATCAGGAAATCAAGCACAGACTGGACAAGCATCTCCTAACCAACCATTCCAATCTTTACCTCAAGTAGTTCAGATTCCTCTGGCTGCAGGATCCACAACTGTGCCATCACTTAGTGCACCAATTCCTCATTCACTGAATACTCTTTCTGAGTTTATAAATCGCATGGAGCAGACACTATCACAAAATGGTAATGATTTTGGGCTCATTGTCATCCCATTTCTGTTGAAAAAGACCATATGTTTAATAGTTAGATTTGCTGAAGCAGGTTATCAAACAAATTCGTCTTCACTGAGTGGAGGAGAGCAAACACATGTGGAATTACCCTCCAACCCACAAGGGTTGCCAACAGTTGAAGCATTAAGTGCTGTCTTGCATCATGCTGAACAGCTGCTCGGGGGCCATGCTATTGCTGCACTATCTTCACTGTTACTTTTGGAGAATATATGTGCTTTGCAAGCTAAAAGATGCCAAAATGGCTTACTTGTTGAGCCTACTTTAGGAGGACGCTTGGAGCGAGAGGGAACTACTTCTGATCCAAATATACGGGGTCAAATACAGTCTGAGTCAATGCAAATAGGACTTGCCATGCAGCATTTGGGTGCATTTCTACTTGAGCTTGGCCGTACAATCTTGACACTGCGAATGGGACAGTCTTCTGCAGAGTCTGCTGTCAATGCTGGGCCAGCAGTTTATATTTCCCCATCAGGACCTAATCCTATAATGGTGCAGCCTTTCCCACTTCAAACAAGCTCCCTGTTTGATGGTTCTGTTCCTTCTTCAACTCCCGCAACATTTGGTACAGTTGGTGTTGGAAATACCCCTCGGAATGTAAACATCCATATACATGCCGGTACTTCTCTTGCGCCAATTGTTTCGGCAATTGGTTCTAGGCCAAATAGTGGGGAAGGGGCACAAAATCAACGTCGTAATGCTCCTGGCTCTGGTGATTTAGGATCACTGCGTGCTTTACCTGTAAGAAATATCATTGCAGCAGCTGTACCAGCTTACCCTCCTGGAGCTGGGACTAGTAGTGGCATGCAATCAAGTGGTGTTCCGACTTCACAACTGCCTTCTGATTCAGTTTCATTATCATCCGTCATAGGTGATATCAATTCTCGCGCTAGAAACATTTTAGGAAATATGCGAGGAGATAATACAGTTCTGTCAGGTCAAGTGGAGTCAATTGACCGGGACTTGCCTGTTGAAAGGGAATCACGACCTACTCCTAGAAATGAACAACTAGATACCATGGAGGCAAAAGCTGTTGAAGCTTCCAGTCTGTCTTCAGTTGCTTGCCCATCTGAAAGTGGAGTACATAAGCCCCAACCTGAGGCAGCCCAAACTTCTAACAATGAGGGGAGAGATGTTTTGAGCACCACAGTTGGTTCAACTTCTTCCAATGCACAAGAAAATGCTCAATCTGCTGATGAAAAACATGTAACTGAAAACGCAAAAGCTGTTCCTCTTGGACTGGGTGCGAGTGGCTTGGAGCGTAAGAGGAGAACGAGACTGCAACATCCTGTAAGTAAAGGTGCTGATGATGAATCAGCCAGTTCAGGAAATCAAAATCAGCAAGCCAGGACAAGTGGTCATAATGTATTGCAAGCTCTTGGAAGTCATGAAACTTCTATGAACCAGAGAAATGCTAATGGTCCATCCCAAGTGCCCCCTTCCCCTGGTGATGGCCAGATTGATGTGGCGGGTGTTATGTCTCAGGTCTTGCACAGCCCAGCTTTGAATGGTTTGTTGACAGGGGTTTCACAGCAGACTGGAGTTGGCTCACCTGATGTCTTGAGGAACATGTTGCAGCAGTTCACACAGAGCCCACAGATGAGGAACACTGTCAATCAAATTGCCCAACAGGTTGGCAGTCAGGATATGGGGAATATGTTTGCTGGAATGGAAAGAGGGCAAGGTAGTGGCATTGACTTTTCAAGGATGCTTCAACAGATGATGCCCATTGTATCTCAAGCTCTTGGAGGTGGAATTCCTCCTCAGTCATTCTCTGCTGAAAGGAGAGATCCCCAGGCACTCTTTGGAGATGGAACGCATAACAGAGATGAAAACATTGATGACCGAAGTTTACAGATCAATCTTCAACCAGTGGTAGAGAGGATGGAGCACCTTAGTGCACAGTCAGATGTTTTCCGTGTGGTGGTTGAAAATGCTATCCAGCTATCCAGAGGGGAAAGTTCTTATGATGGTCTTCTGGATGAGTTGTGTAGCGATGAGTGTCTTGCCGGGGACTATGTGGAGATGTTACGACATGATGTGAATCAGCGGCTGAATGGGGATTCTGGGCGAGACTAG 2991 0.4527 MAGQSSNDWPSASSVSAELSDSTVQLNIKTLDSHIYNFQVDKNMLVSLLKDKIANEVGVPVGQQRLIFRGKVLKDNHVLSEYHIENGDTLHLVQRQLNQSQAPGTSSGETTGTSGNRGNDASSGVLHNRVGQISHSVVLGTFNVGEQGEGIVPDLSRVIGAVLNSIGIGGQSTGGVTNGTQSSSASFVNRLKSFKLTGCISYLEPNPSTRGPSGNEAGGMHLENHNQSGNQAQTGQASPNQPFQSLPQVVQIPLAAGSTTVPSLSAPIPHSLNTLSEFINRMEQTLSQNGNDFGLIVIPFLLKKTICLIVRFAEAGYQTNSSSLSGGEQTHVELPSNPQGLPTVEALSAVLHHAEQLLGGHAIAALSSLLLLENICALQAKRCQNGLLVEPTLGGRLEREGTTSDPNIRGQIQSESMQIGLAMQHLGAFLLELGRTILTLRMGQSSAESAVNAGPAVYISPSGPNPIMVQPFPLQTSSLFDGSVPSSTPATFGTVGVGNTPRNVNIHIHAGTSLAPIVSAIGSRPNSGEGAQNQRRNAPGSGDLGSLRALPVRNIIAAAVPAYPPGAGTSSGMQSSGVPTSQLPSDSVSLSSVIGDINSRARNILGNMRGDNTVLSGQVESIDRDLPVERESRPTPRNEQLDTMEAKAVEASSLSSVACPSESGVHKPQPEAAQTSNNEGRDVLSTTVGSTSSNAQENAQSADEKHVTENAKAVPLGLGASGLERKRRTRLQHPVSKGADDESASSGNQNQQARTSGHNVLQALGSHETSMNQRNANGPSQVPPSPGDGQIDVAGVMSQVLHSPALNGLLTGVSQQTGVGSPDVLRNMLQQFTQSPQMRNTVNQIAQQVGSQDMGNMFAGMERGQGSGIDFSRMLQQMMPIVSQALGGGIPPQSFSAERRDPQALFGDGTHNRDENIDDRSLQINLQPVVERMEHLSAQSDVFRVVVENAIQLSRGESSYDGLLDELCSDECLAGDYVEMLRHDVNQRLNGDSGRD 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0043 996 MobiDBLite consensus disorder prediction 623 644 - -
Lele28g0043 996 MobiDBLite consensus disorder prediction 205 241 - -
Lele28g0043 996 MobiDBLite consensus disorder prediction 98 125 - -
Lele28g0043 996 CDD Ubl_ubiquitin_like 26 93 - -
Lele28g0043 996 MobiDBLite consensus disorder prediction 654 701 - -
Lele28g0043 996 MobiDBLite consensus disorder prediction 525 540 - -
Lele28g0043 996 MobiDBLite consensus disorder prediction 220 241 - -
Lele28g0043 996 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Lele28g0043 996 MobiDBLite consensus disorder prediction 519 546 - -
Lele28g0043 996 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Lele28g0043 996 Gene3D - 13 108 - -
Lele28g0043 996 PRINTS Ubiquitin signature 76 97 IPR019956 -
Lele28g0043 996 PRINTS Ubiquitin signature 55 75 IPR019956 -
Lele28g0043 996 MobiDBLite consensus disorder prediction 770 792 - -
Lele28g0043 996 MobiDBLite consensus disorder prediction 567 587 - -
Lele28g0043 996 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 995 - -
Lele28g0043 996 MobiDBLite consensus disorder prediction 739 756 - -
Lele28g0043 996 MobiDBLite consensus disorder prediction 770 784 - -
Lele28g0043 996 MobiDBLite consensus disorder prediction 615 756 - -
Lele28g0043 996 MobiDBLite consensus disorder prediction 723 737 - -
Lele28g0043 996 SUPERFAMILY Ubiquitin-like 20 97 IPR029071 -
Lele28g0043 996 FunFam Large proline-rich protein BAG6 16 109 - -
Lele28g0043 996 SMART ubq_7 24 95 IPR000626 GO:0005515
Lele28g0043 996 MobiDBLite consensus disorder prediction 568 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0043 Lele-ChrLele28 222828 230666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0043 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.278 8.20e-11 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0034 25 195578 200844 Lele28g0043 28 222828 230666 hybridization
Lele26g0039 26 225743 233579 Lele28g0043 28 222828 230666 hybridization