Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0028 ATGGCGGTGGATGGAGAGGAAGGAGGAGATGAAACCCTGGAGGGGGACAATGGGTTGGACGAGTCCAATGCGGTGGAAGAAATTCAGAGAGTGATTGAATCGGTAGCTCAGTTTGGGGAATATAAGAAGACTCACAGGAAAGAATGTCATAATCTTGCGAGGCGGATGAAAATCTTGTTGCCACTCGTCGAAGAAATTCGGGATCTGGGTCCGCATATTCCAGAGAAGGGCATAGCTTGGTTAAAGGATTTGAAGGATGCTCTCCTTTTTGCGAAGAAATTGCTGAAAATGGGTAGCGAGGGGAGCAAGATTCACCTGGCACTCGAGAGCGAAGCGGTTATGTCCAATTTTCGATCTGCCTACGAAAGATTAAGCCGAGTGTTCGATAGTTTCCCCAGTGAAGAATTAGAAATATCAGATGAAATGAAGGAACAGCTTGAGCTAATGTGCGTGCAACTCAGGCGGGTAAAGAGGCGAACGGATACACAAGACATAGAACTTGCAATGGATATGATAGTCGCATTCTCCAAGGACAATAGCCGAAATGCTGACAGCGCTATCATCGAGAGGCTTGGACAAAAGCTTGACCTTCATACTGTTGAGGAACTTAATATTGAGACTGTAGCCGTCAGGAATCTTGTACGAGAAAGAAAAGGCAAAAATGCAGAGGGTACCCAGCAAATCATTGACCTTCTCAAGAGATTCAAACAAGTTGTCGGCATGGAAGACACCAACATTTTTGATGAACCTGTCATGCCCAAAACGCTTGACAAGTGCACATCTTTGGTCATCCCTCACGAATTTCTCTGCCCAATCACCTTGGAAATTATGACAGATCCTGTTATCATCGCCAGCGGACAGACGTATGAAAGGGAAAGCATAGAGAAGTGGTTCCAGTCTAATCGTAATACTTGCCCAAAGACTAGACAAACTTTGGCTCACCTGTCATTGGCACCAAATTTTGCTCTTAAAAATTTGATCTCCGTTTGGTGTGAGGAAAACAAATTTAAACTCCCCAAGAAAGAAGCTTGTTCAAGTGAAGAAAGTTGCCTGGGGGATCCTAAAGAGGAAATACGGGCTTTGGTTGGGGACCTATCATCTGTCCATTTAGAAGTGCAGAGACAGGCAGTGAAAAAGATACGTATGATATCAAAGGAGAATTCTGAGAACAGGGTTTTGGTGGCAGAGAATGGAGGAATACCGCCGTTGGTGCAGCTCTTGTCCTATCCAGATTCAAAAATACAGGAGCATGCGGTGACAGCGCTTTTAAATCTTTCAATTGATGAGGGAAACAAGATACTTGTATGCAGAGAAGCAGCAATTCCAGCGATTATAGAAGTACTGCATAGTGGGAGTATTGAGGCCAAAGAAAATTCTGCAGCAGCCCTATTTAGCTTGTCAATGCTGGATGAGAATAAAGAAATTGTGGGCTTATCGAATGGCATCCCCCCTTTGGTAGAATTGCTGAGGAATGGGACGATTAGAGGGAAAAAGGATGCTATTACGGCTCTGTTTGGTTTATCTCTTAACCATGCAAACAAGGGAAGGGCAGTTGAGGCGGGCATTGTGGCCCCTTTACTCCAATTGCTCAAGGCCACCGACTTGGGAATGATTGATGAGGCCCTCTCCATCCTCTTGCTTCTCGCGTCGGTCCCGGAGGGACGACAGGAGCTCGGACAGCTCCCTTTCATCGAAACTCTCGTTGAGTTCATCAGACAAGGAACTCCCAGGAACAAGGAATGCGCACTGTCTGTTCTTCTGGAGTTGGGTTCCAATAATTCTAACCTTATTCTTGCAGCCCTTCAGTTTGGCGTATACGAGCACTTAATCGACATCAAAGAAAGTGGAACAGCTCGAGCCAAGAGAAAAGTAGACGCTCTCTTATACGTCATGAGCAAGAGCGAGCATATTTAA 1914 0.4545 MAVDGEEGGDETLEGDNGLDESNAVEEIQRVIESVAQFGEYKKTHRKECHNLARRMKILLPLVEEIRDLGPHIPEKGIAWLKDLKDALLFAKKLLKMGSEGSKIHLALESEAVMSNFRSAYERLSRVFDSFPSEELEISDEMKEQLELMCVQLRRVKRRTDTQDIELAMDMIVAFSKDNSRNADSAIIERLGQKLDLHTVEELNIETVAVRNLVRERKGKNAEGTQQIIDLLKRFKQVVGMEDTNIFDEPVMPKTLDKCTSLVIPHEFLCPITLEIMTDPVIIASGQTYERESIEKWFQSNRNTCPKTRQTLAHLSLAPNFALKNLISVWCEENKFKLPKKEACSSEESCLGDPKEEIRALVGDLSSVHLEVQRQAVKKIRMISKENSENRVLVAENGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKILVCREAAIPAIIEVLHSGSIEAKENSAAALFSLSMLDENKEIVGLSNGIPPLVELLRNGTIRGKKDAITALFGLSLNHANKGRAVEAGIVAPLLQLLKATDLGMIDEALSILLLLASVPEGRQELGQLPFIETLVEFIRQGTPRNKECALSVLLELGSNNSNLILAALQFGVYEHLIDIKESGTARAKRKVDALLYVMSKSEHI 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0028 637 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 398 440 IPR000225 GO:0005515
Lele28g0028 637 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 439 481 IPR000225 GO:0005515
Lele28g0028 637 Pfam U-box domain 264 335 IPR003613 GO:0004842|GO:0016567
Lele28g0028 637 Gene3D - 20 133 IPR036537 GO:0007166
Lele28g0028 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Lele28g0028 637 SMART arm_5 551 591 IPR000225 GO:0005515
Lele28g0028 637 SMART arm_5 510 550 IPR000225 GO:0005515
Lele28g0028 637 SMART arm_5 387 427 IPR000225 GO:0005515
Lele28g0028 637 SMART arm_5 469 509 IPR000225 GO:0005515
Lele28g0028 637 SMART arm_5 428 468 IPR000225 GO:0005515
Lele28g0028 637 SMART Ubox_2 267 330 IPR003613 GO:0004842|GO:0016567
Lele28g0028 637 PANTHER U BOX DOMAIN-CONTAINING 46 629 - -
Lele28g0028 637 MobiDBLite consensus disorder prediction 1 20 - -
Lele28g0028 637 SUPERFAMILY ARM repeat 358 631 IPR016024 -
Lele28g0028 637 SUPERFAMILY RING/U-box 264 338 - -
Lele28g0028 637 Gene3D - 338 635 IPR011989 -
Lele28g0028 637 CDD RING-Ubox_PUB 268 310 IPR045210 -
Lele28g0028 637 FunFam RING-type E3 ubiquitin transferase 342 637 - -
Lele28g0028 637 FunFam RING-type E3 ubiquitin transferase 259 337 - -
Lele28g0028 637 FunFam RING-type E3 ubiquitin transferase 21 134 - -
Lele28g0028 637 ProSiteProfiles U-box domain profile. 263 337 IPR003613 GO:0004842|GO:0016567
Lele28g0028 637 Pfam Armadillo/beta-catenin-like repeat 387 426 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0028 Lele-ChrLele28 142754 145670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0028 25 637 U-box Gene Family AT5G42340 61.726 0.0 728