Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0024 ATGCATCCGGGTTTTGCAGGGACTGGGCGGTCCAAGTCTCATGCCCATAGCGGCGACGATGGAAGCAAGGGAGGATCCTCTGATGGGAAGGGCAAGAATGGCGTTGCGAGCAGCCCAAAAAGCAGTGCAGCCCATAGTTTCACTTTCCGTGAACTTGCAGCGGCAACCAGAGGTTTCAAGCCAGTGAATTTGATTGGGGAAGGAGGTTTTGGAAGGGTTTACAAAGGTCGTCTTGATACAGGCCAGCTTGTTGCCGTAAAACAATTAAATCACGATGGTCATCAAGGTTTTCAGGAATTCATAGTGGAGGTTCTCATGTTAAGCCTGCTACATCATTATAATCTTGTCACCTTGTTTGGTTACTGCACCGACGGAGATCAAAGGCTTTTGGTTTATGAATATATGCCTATGGGTAGCTTAGAAGATCATCTTTTTGATTTAAAACCAGACCAAGAGCTGCTAAGTTGGAACGATCGGATGAAGATTGCTGTTGGGGCTGCACGAGGGCTTGAGTACCTTCATTGTAAAGCAAATCCACCTGTCATCTATCGGGACTTGAAATCTGCGAACATATTATTAGACAATGACTTCAACCCAAAACTCTCAGATTTTGGGCTTGCTAAACTTGGTCCTGTTGGAGATAATACTCATGTTTCAACCAGAGTGATGGGAACATATGGCTACTGTGCCCCAGAGTATGCCATGAGTGGCAAATTGACTCTTAAATCTGATATCTATAGCTTTGGTGTGGTTTTGATGGAGTTGATTACTGGACGAAGGGCAATAGATGTCAGTAAGAAACCAGGGGAGCAAAACTTAGTTGCTTGGTCTCGACAGTTTCTGAAGGATCGGAGGAAGTTTGTACAGCTGGTTGATCCTCGTCTTGAAGGACAATTCCCCTTGCGCTGCTTGCATCATGCGATTGCTATCACTGCAATGTGTCTGCAAGAGCAACCGAATTTCCGGCCACTCATTGGTGATATTGTTGTGGCACTGGAATACTTGCACTCACAGAGTAAAGCCTCAGAAGTCCCTAAAGGAGGGGAGCAATGTGTGCCACCTCGATCACCCTCACAAGGGGACCGATATTGTTTTGAGGAATCAAATTCTAGATTGAGGTCAACTTCGGCCTAA 1134 0.4586 MHPGFAGTGRSKSHAHSGDDGSKGGSSDGKGKNGVASSPKSSAAHSFTFRELAAATRGFKPVNLIGEGGFGRVYKGRLDTGQLVAVKQLNHDGHQGFQEFIVEVLMLSLLHHYNLVTLFGYCTDGDQRLLVYEYMPMGSLEDHLFDLKPDQELLSWNDRMKIAVGAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLMELITGRRAIDVSKKPGEQNLVAWSRQFLKDRRKFVQLVDPRLEGQFPLRCLHHAIAITAMCLQEQPNFRPLIGDIVVALEYLHSQSKASEVPKGGEQCVPPRSPSQGDRYCFEESNSRLRSTSA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0024 377 Gene3D Phosphorylase Kinase; domain 1 32 134 - -
Lele28g0024 377 ProSiteProfiles Protein kinase domain profile. 59 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0024 377 MobiDBLite consensus disorder prediction 342 377 - -
Lele28g0024 377 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524
Lele28g0024 377 SUPERFAMILY Protein kinase-like (PK-like) 37 334 IPR011009 -
Lele28g0024 377 CDD STKc_IRAK 65 333 - -
Lele28g0024 377 FunFam probable serine/threonine-protein kinase RLCKVII 32 134 - -
Lele28g0024 377 MobiDBLite consensus disorder prediction 362 377 - -
Lele28g0024 377 FunFam Serine/threonine-protein kinase PBS1 135 349 - -
Lele28g0024 377 SMART serkin_6 59 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0024 377 Pfam Protein kinase domain 62 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0024 377 MobiDBLite consensus disorder prediction 1 42 - -
Lele28g0024 377 PANTHER OS07G0668900 PROTEIN 35 342 - -
Lele28g0024 377 Gene3D Transferase(Phosphotransferase) domain 1 135 350 - -
Lele28g0024 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0024 Lele-ChrLele28 108033 110731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0024 8 367 Glycoside Hydrolase AT3G07070 59.116 3.15e-148 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lele28g0024 Pkinase 5.1e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0019 26 108545 111407 Lele28g0024 28 108033 110731 hybridization