Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0018 ATGGCTTCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCAGATGAGAGCTATCATTTTGAGAGGATGCATATTGAGCCTATTTATGATGCTTTTGTATGTCCACTGACAAAGCAAGTTATGCGTGATCCTGTTACGTTGGAAACTGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGGCGCAAACTCGTTTGCCCTTTGACCCTGAAAGAACTAAAAAGCACAGAACTAAATCCCAGTATTGCTTTACGTAACACCATTGAAGAGTGGACTGCAAGGAATGAAGCAGCTCAGCTGGACATGGCTCGTAGGTCATTGAATATGGGTAGTCCTGAAAATGATACATTACAGGCATTGCATTATATCCAACACATCTGCCAAAGAAGTAGGTCTAATAAGCATATTGTCCGTAGTGCGGGGCTAATACCTATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTACGGCTTTGGGAACCCTTAGAATTGTCGTGGAGGAAGACAATGAGAATAAGGTTGTCACAGGTTTTCTGGTTATCTTTTCTTTTTCATTTGAATTGTTGACTGAAGGGGACACCGTGCGTACAATAGTAAAATTCCTTTCTCATGAACTCTCCAAAGAAAGAGAGGAAGCTGTCTCTCTGCTTTATGAGCTCTCAAAATCAGAAACTCTGTGTGAGAAGATAGGTTCAATCAATGGGGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCCGAAGATATTTTGACGGTCGAGAAGGCTGAAAAAACGTTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAGATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAACTGCTTGAAGGTCCACCTGAAATCAAACTGGCCATGGCCGGGTACCTTGGTGAGCTGGTTTTGAATAATGATGTAAAGGTCCTTGTAGCCAAAACCGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCCAGGGAAGCTTCGCTGAAAGCTCTTAATCAGATATCATCATGTGACCCAAGTGCAAAGGTTTTGATAGAGGCTGGAATACTTTCATCTCTTGTCAATGACCTTTTTGCAGTGGGCCCTAATCAGCTTCCCATGCGACTAAAAGAAGTCTCTGCTACAATTCTTGCCAATGTTGTGAACTCAGGAGAGGACTTTGATTCTATCCCATTTGGACCGGATCACCAGACTCTGGTTTCGGAGGACATAGTTCATAATCTGCTCCATCTTATAAGCAACACTGGTCCAGCTATTGAATGCAAACTTCTCCAGGTCCTTGTTGGACTTACTGGTTCTCCAACTACTGTTCTGAGTGTTGTCACAGCTATCAAAAGCTCTGGTGCCATTATCAGTCTTGTTCAATTTATTGAGGCTCCACAGAAAGATTTGCGTGTAGCTTCTATAAAACTCCTTCAGAATTTGTCTCCCCTCATGGGCCAGGAATTAGCTGATGCATTGCGTGGTTCAGTCGGACAACTGGGCAGTCTAATTAAGGTCATATCAGAAAATACGGGAATCAGTGAAGAGCAGGCAGCAGCTGTAGGCCTTCTAGCTGATCTGCCTGAGAGGGATTTGGGGCTCACAAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTCCACTCTAGAGTGATTACCATTAGGCAGGGACAGATCAGTGGCAGTCGCTTTGTGACACCATTTCTTGAGGGGCTTGTGAAGATTCTTGCAAGGCTTACATATGTATTGGCTGATGAGCCTGATGCTCTATCATTCTGCCGTGAGCATAGTCTTGCTGTGCTATTTATTGAACTGCTTCCGGCCAATGGACTTGATAATGTACAGATGGTTTCTGCAATTGCTTTGGAGAATCTGTCCCAAGAATCAAAGAATTTAACAAAATTACCTGAGATGGCATCTCCTGGTTTTTGTGCCTTAATATTTCCATGCCTTAGCAAACAGCCTGTCATAACAGGATTGTGTAGGCTCCACCGAGGGTTATGTTCATTAAAAGAAACATTTTGTCTAATTGAAGGGCAGGCAGTACGCAAGTTAGTAGCCCTACTGGACCACACAAATGTGAACGTTGTTGAGGCAGCATTGGCAGCTTTATCTACTTTGTTAGACGATGGAGTTGATATTGAACAAGGGGTGATGGTGCTTTTTGAGGCAGAGGGAATTAAGCCTATACTTGATGTGTTACTTGAGAAACGGACAGAAAATCTGAGGAGGAGGGCAGTTTGGGCAGTTGAGAGATTGTTGCGAACTGATGATATAGCCTATGAAGTTTCTGGTGATCAAAATGTTGGTACAGCACTTGTTGATGCTTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGTGCTCTCAAGCATGTGGACAAGATTCCAAACTTCTCTGGAATTTTTCCAAACATGGGATAG 2481 0.4345 MASSWDGSNDPGSQSDESYHFERMHIEPIYDAFVCPLTKQVMRDPVTLETGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSTELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENDTLQALHYIQHICQRSRSNKHIVRSAGLIPMIVDMLKSSSRKVRCTALGTLRIVVEEDNENKVVTGFLVIFSFSFELLTEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPEIKLAMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSSLVNDLFAVGPNQLPMRLKEVSATILANVVNSGEDFDSIPFGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTGSPTTVLSVVTAIKSSGAIISLVQFIEAPQKDLRVASIKLLQNLSPLMGQELADALRGSVGQLGSLIKVISENTGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVHSRVITIRQGQISGSRFVTPFLEGLVKILARLTYVLADEPDALSFCREHSLAVLFIELLPANGLDNVQMVSAIALENLSQESKNLTKLPEMASPGFCALIFPCLSKQPVITGLCRLHRGLCSLKETFCLIEGQAVRKLVALLDHTNVNVVEAALAALSTLLDDGVDIEQGVMVLFEAEGIKPILDVLLEKRTENLRRRAVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0018 826 SMART arm_5 139 179 IPR000225 GO:0005515
Lele28g0018 826 SMART arm_5 360 405 IPR000225 GO:0005515
Lele28g0018 826 SMART arm_5 685 726 IPR000225 GO:0005515
Lele28g0018 826 SMART arm_5 730 772 IPR000225 GO:0005515
Lele28g0018 826 SMART arm_5 279 319 IPR000225 GO:0005515
Lele28g0018 826 Gene3D - 330 499 IPR011989 -
Lele28g0018 826 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Lele28g0018 826 SUPERFAMILY ARM repeat 467 814 IPR016024 -
Lele28g0018 826 CDD RING-Ubox_PUB 33 78 IPR045210 -
Lele28g0018 826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 115 IPR013083 -
Lele28g0018 826 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 822 - -
Lele28g0018 826 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Lele28g0018 826 Gene3D - 586 814 IPR011989 -
Lele28g0018 826 Coils Coil 266 289 - -
Lele28g0018 826 SUPERFAMILY ARM repeat 120 457 IPR016024 -
Lele28g0018 826 Gene3D - 119 329 IPR011989 -
Lele28g0018 826 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
Lele28g0018 826 SUPERFAMILY RING/U-box 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0018 Lele-ChrLele28 86043 89501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0018 2 826 U-box Gene Family AT1G76390 63.845 0.0 1016