Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0005 ATGGAGAAAAGTGTGAGCCCCTTATCGGCAAAGGACGCATTCGAGAAGCTAGAGAAGGTAGGAGAAGGGACGTACGGGAAGGTGTACAGAGCAATTGATAAATCAACTGGCAAGATCGTTGCTCTCAAGAAGACTCGCCTGCACGAGGATGAAGAAGGCGTCCCTCCCACCACTCTCCGTGAGGTTTCCATTCTGCGTATGCTCTCTAGGGATCCTCATGTTGTCAGGCTGATGGATGTAAAACAAGGTCAGAACAAGGAGGGAAAGACAGTGCTGTACTTGGTGTTTGAGTACATGGACACGGATCTCAAGAAATTCATTCGCAGTTTCCGTCAAACTGGGGAAAACATCCCCGCTCCAACAGTCAAAAGCTTGATGTACCAACTCTGCAAGGGCGTTGCTTTTTGCCACGGTCATGGAATCTTGCATAGGGATCTGAAGCCCCATAACCTCTTGATGGACCGCAAAACGATGATGCTTAAAATAGCTGATCTTGGGTTGGCTCGAGCATTTACTGTGCCAATCAAGAAATACACACACGAGATCCTGACCTTGTGGTATAGAGCACCTGAAGTCCTTTTGGGAGCAACCCATTACTCAATGGCAGTAGATATGTGGTCTGTAGGATGCATATTTGCTGAACTAGTCGCCAAGCAGGCCCTCTTTCCTGGTGATTCTGAGCTGCAACAGCTCCTGCATATATTCAGGCTGTTGGGTACTCCAAATGAGGAGATTTGGCCAGGCGTTAGTAAACTGATGAACTGGCATGAATACCCCCAGTGGAGTCCTCAAAATCTGTCAACTGCTGTCCCTCATTTGGACGAGACTGGATTGGATCTGCTCTCTCAAATGCTGCAATACGAGCCTTCAAAACGGATTTCTGCAAAGAAAGCTATGGAACATCCTTACTTCGATGAACTGGACAAGAAGTATCTTTAG 939 0.4739 MEKSVSPLSAKDAFEKLEKVGEGTYGKVYRAIDKSTGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIRSFRQTGENIPAPTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDMWSVGCIFAELVAKQALFPGDSELQQLLHIFRLLGTPNEEIWPGVSKLMNWHEYPQWSPQNLSTAVPHLDETGLDLLSQMLQYEPSKRISAKKAMEHPYFDELDKKYL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0005 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Lele28g0005 312 SMART serkin_6 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0005 312 FunFam Cyclin-dependent kinase B2,2 10 100 - -
Lele28g0005 312 SUPERFAMILY Protein kinase-like (PK-like) 11 308 IPR011009 -
Lele28g0005 312 FunFam Cyclin-dependent kinase 2 102 311 - -
Lele28g0005 312 PANTHER CELL DIVISION PROTEIN KINASE 12 305 - -
Lele28g0005 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0005 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g0005 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Lele28g0005 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Lele28g0005 312 Gene3D Transferase(Phosphotransferase) domain 1 102 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0005 Lele-ChrLele28 27064 28824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0005 8 310 Core Cell Cycle Gene Families AT1G20930 86.139 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Lele28g0005 Pkinase 6.7e-72 CL0016