Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g2074 ATGATTAGAAGCAGTCCCGCCAACCTGGATTTGGAAAGCCCGGTGGGGTCAATGGCGGGTGATGACATGGTTCCACCTAGGGTTTTCAAATTGCTACTTCTTACAAATTGGGAAAGGCTGCTTGATATGATGGCTTCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCTGTCAGATGAGAGCTATCATTTTGAGAGGATGCATATTGAGCCTATTTATGATGCTTTTGTATGTCCACTGACAAAGCAAGTTATGCGTGATCCTGTTACGTTGGAAACTGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGGCGCAAACTAGTTTGCCCTCTGACCCTGAAAGAACTAAAAAGCACAGAACTAAATCCCAGTATTGCTTTACGTAACACCATTGAAGAGTGGACTGCAAGGAATGAAGCAGCACAGCTGGACATGGCTCGTAGGTCATTGAATATGGGTAGTCCTGAAAATGATACATTACAGGCATTACATTATATCCAACACATCTGCCAAAGAAGTAGGTCTAATAAGCATATTGTCCGTAGTGCGGGGCTAATACCTATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTACGGCTTTGGGAACCCTTAGAATTGTCGTGGAGGAAGACAATGAGAATAAGGAATTGTTGGCTGAAGGGGACACCGTGCGTACAATAGTAAAATTCCTTTCTCATGAACTCTCCAAAGAAAGAGAGGAAGCTGTCTCTCTGCTTTATGAGCTCTCAAAATCAGAAACTCTGTGTGAGAAGATAGGTTCAATCAATGGGGCTATTCTTATATTAGTTGGAATGACAAGTAGCAAATCAGAAGATATTTTGACGGTCGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAGATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAACTGCTTGAAGGTCCGCCTGAAATCAAACGGGCCATGGCCGGGTACCTTGGTGAGCTGGTTTTGAATAATGATGTAAAGGTCCTTGTAGCCAAAACCGTGGGTTCATCTCTGATCAATATAATGAAAAGCGGTAATATGCAGTCTAGGGAAGCTTCGCTTAAAGCTCTTAATCAGATATCATCGTGTGACCCAAGTGCAAAGGTTTTGATAGAGGCTGGAATACTTTCACCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCAGCTTCCCATGCGACTAAAAGAAGTCTCTGCTACAATTCTTGCCAATGTTGTGAACTCAGGAGAGGACTTTGATTCTATCCCATATGGACCGGATCACGAGACTCTGGTTTCAGAGGACATAGTTCATAATCTGCTCCATCTTATAAGCAACACTGGTCCAGCTATTGAATGCAAACTTCTCCAGGTCCTTGTTGGACTTACTGGTTCTCCAACTACTGTTCTGAGTGTTGTCACAGCTATCAAAAGCTCTGGTGCCATTATCAGTCTTGTTCAATTTATTGAGGCTCCACAGCAAGATTTGCGTGTAGCGTCTATAAAACTCCTTCAGAATTTGTCTCCCCTCATGGGCCAGGAATTAGCTGATGCATTGCGTGGTTCAGTCGGACAACTGGGCAGTCTAATTAAAGTCATATCAGAAAATACGGGAATTAGTGAAGAGCAGGCAGCAGCTGTTGGCCTTCTAGCTGATCTGCCTGAGAGGGATTTGGGGGTCACAAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTCTACTCGAGAGTGATTACCATTAGGCAGGGACAGATCAGTGGCAGTCGCTTTGTGACACCAGTTCTTGAAGGGCTTGTGAAGATTCTTGCAAGGCTTACATATGTATTGGCTGATGAGCCTGATGCTATATCATTCTGCCGTGAGCATAGTCTTGCTGCGCTATTTATTGAACTGCTTCAGGCCAATGGACTTGATAACGTACAGATGGTTTCTGCAATTGCTTTGGAGAATCTGTCCCAAGAATCAAAGAATTTAACAAAATTACCTGAGATGCCATCTCCTGGTTTTTGTGCCTCAATATTTCCATGCCTTAGCAAACAGCCTGTCATAACAGGATTGTGTAGGCTCCACCGAGGGTTATGTTCATTAAAAGAAACATTTTGTCTAATTGAAGGGCAGGCAGTACGCAAGTTAGTAGCCCTACTGGACCACACAAATGTGAACGTTGTTGAGGCAGCATTGGTAGCTTTATCTACTTTGTTAGACGATGGAGTTGATATTGAGCAAGGGGTGATGGTGCTTTTTGAGGCAGAGGGAATTAAGCCTATACTTGATGTGTTATTTGATAAACGAACAGAAAATCTGATGAGGAGGGCAGTTTGGGCAGTTGAGAGATTGTTGCGAACTGATGATATAGCCTATGAAGTTTCTGGTGATCAAAATGTTGGTACAGCACTTGTTGATGCTTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGTGCTCTCAAGCATGTGGACAAGATTCCAAACTTCTCAGGAATTTTTCCAAACATGGGATAG 2571 0.4368 MIRSSPANLDLESPVGSMAGDDMVPPRVFKLLLLTNWERLLDMMASSWDGSNDPGSLSDESYHFERMHIEPIYDAFVCPLTKQVMRDPVTLETGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSTELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENDTLQALHYIQHICQRSRSNKHIVRSAGLIPMIVDMLKSSSRKVRCTALGTLRIVVEEDNENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPEIKRAMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSPLVNDLFAVGPNQLPMRLKEVSATILANVVNSGEDFDSIPYGPDHETLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTGSPTTVLSVVTAIKSSGAIISLVQFIEAPQQDLRVASIKLLQNLSPLMGQELADALRGSVGQLGSLIKVISENTGISEEQAAAVGLLADLPERDLGVTRQMLDEGAFQLVYSRVITIRQGQISGSRFVTPVLEGLVKILARLTYVLADEPDAISFCREHSLAALFIELLQANGLDNVQMVSAIALENLSQESKNLTKLPEMPSPGFCASIFPCLSKQPVITGLCRLHRGLCSLKETFCLIEGQAVRKLVALLDHTNVNVVEAALVALSTLLDDGVDIEQGVMVLFEAEGIKPILDVLFDKRTENLMRRAVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g2074 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 158 IPR013083 -
Lele27g2074 856 SMART Ubox_2 75 143 IPR003613 GO:0004842|GO:0016567
Lele27g2074 856 SUPERFAMILY ARM repeat 496 844 IPR016024 -
Lele27g2074 856 Pfam U-box domain 74 148 IPR003613 GO:0004842|GO:0016567
Lele27g2074 856 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 60 852 - -
Lele27g2074 856 SUPERFAMILY RING/U-box 65 153 - -
Lele27g2074 856 CDD RING-Ubox_PUB 76 121 IPR045210 -
Lele27g2074 856 SMART arm_5 715 756 IPR000225 GO:0005515
Lele27g2074 856 SMART arm_5 489 530 IPR000225 GO:0005515
Lele27g2074 856 SMART arm_5 633 674 IPR000225 GO:0005515
Lele27g2074 856 SMART arm_5 182 222 IPR000225 GO:0005515
Lele27g2074 856 SMART arm_5 760 802 IPR000225 GO:0005515
Lele27g2074 856 SMART arm_5 309 349 IPR000225 GO:0005515
Lele27g2074 856 SMART arm_5 390 435 IPR000225 GO:0005515
Lele27g2074 856 SMART arm_5 224 264 IPR000225 GO:0005515
Lele27g2074 856 Gene3D - 165 359 IPR011989 -
Lele27g2074 856 Gene3D - 616 846 IPR011989 -
Lele27g2074 856 Gene3D - 360 529 IPR011989 -
Lele27g2074 856 ProSiteProfiles U-box domain profile. 71 150 IPR003613 GO:0004842|GO:0016567
Lele27g2074 856 Coils Coil 296 319 - -
Lele27g2074 856 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 235 IPR000225 GO:0005515
Lele27g2074 856 SUPERFAMILY ARM repeat 163 487 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g2074 Lele-ChrLele27 24649514 24654080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g2074 63 856 U-box Gene Family AT1G20780 66.289 0.0 1023