LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g2054	ATGCATACGGTGGTGACGACTTGTAAACGTTTTGCCTCCTCTCTTTGCTTCGCGAATTGGTGTCTTCAAAGATCGTCGCCTGCATCTACGAAGCTTCGAAACGCTGCGACACTGAGATCTCAGCAGCTCAACCCGTTCTTATCATTTCGCTCCATCCTTTCTGTTGCCCCATCCAATCCCCCTCTGTGCTTTCTTAGCTACTTTGAAATCGTTTTGGTGGCACTTAGCTCTAACGATTGCCCCAGTGCTAGTAATGTTTCAGCAGAATTGTCTGATTCAACTGTTCAGCTCAATATCAAGACTTTAGACTCCCACATATACAGTTTTCACGTGGATAAAAACATGCTAGTTTCAATTTTGAAGGAGAAAATAGCAAATAAAGTTGGTGTTCCAGTAGGTCAGCAGCGGTTAATATTCAGGGGGAAAGTGCTGAAGGATAATCATGTTCTTTCTGAGTATCATATTGAGAATGGGGATACATTGCATTTAGTTCAAAGGCAACTGAACCAGTCACAGGCTCCTGGTACCAGTTTTGGTGAGACAACTGGTACAAGTGGAAACCGAGGAAATGATGCAAGCTCTGGGGCGCATCATAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTGGGGACCTTTAATGTGGGGGAACAAGGTGAAGGAATTGTTCCTGATCTTAGTCGGGTCATTGGGGCGGTTTTGAACTCTATTGGAATTGGTGGGCAGAGCACTGGTGGTGTGACAAATGGTACACAGTCTTCTTCACCAAATCCTTCTACTCAGGGTCCTTCTGGGAATGAAGCTGGGGGAATGCATCTTGAAAATCAGAACCAATCAGGAAATCAAACACAGACTGGACAAGCATTTCCTAACCAACCATTCCAATCTTTACCTCAAGTAGTTCAGATTCCTCTGGCTGCAGGATCCATAACTGTGCCATCACTTAGTGCACCAATTCCTCATTCACTGAATACTCTTTCTGAGTTTGTAAATCGCATGGAGCAGACACTATCACAAAATGGTTATCAAACAAATTCGTCTTCACTGAGTGGAGGAGAGCAAACACATGTGGAATTACCCTCCAACCCACAAGGGTTGCCAACAGTTGAAGCATTAAGTGCTGTCTTGCATCGTGCTGAACGGCTGCTCAGTGGCCATGCTATTGCTGCACTATCTCATATTGCAGGACGCTTGGAGCGAGAGGGAACTACTTCTGATCAAAATATACGGGGTCAAATACAGTCTGAGTCAATGCAAATAGGACTTGCCATGCAGCATTTGGGTGCATTTCTACTTGAGCTTGGCCGTACAATCTTAACACTGCGAATGGGACAGTCTTCTGCAGAGTCTGCTGTCAATGCTGGGCCAGCAGTTTATATTTCCCCATCAGGACCTAATCCTATAATGGTGCAGCCTTTCCCACTTCAAACGAGCTCCCTGTTTGGTGGTTCTGTTCCTTCTTCAACTCCTGCAACATTTGGTACTGTTGGTGTTGGAAATGCCCCTCGGAATGTGAACATCCATATACATGCTGGTACTTCTCTTGCGCCAATTGTTTCGGCAATTGGTTCTAGGCCAAATAATGGGGAAGGGGCACAAAATGAACGTCATAATACTCATGGCTCTGGTGATTTAGGATCAATGCGTGATTTAGCTGTGAGAAATATCATTGCAGCAGCTGTACCAGCTTACCCTCCTGGTGCTGGGACCAGTAGTGGCATGCAATCAAGTGGTCAAGCGGAGTCAATCAACCGGGACTTGCCTGTTGGAAGGGAATCACGACCTACTCCTGGAAATGAACAACTAGATACCATGGAGGCAAATGCTGTTGAAGCTTCCAGTCTGTCTTCAGTTGCTTGCACATCTGAAAGTGGAGTACATAAGCCCCAACCTGAGGCAGCCCAAACTTCTAACAATGAGGGGAGAGATGTTTTGAGCCCCACATTTGGTTCAACTTCTTCCAATGGACAAGAAAATGCTCAATCTGCTGGTGAAAAACATGTAACTGACAATGCAAAAGCTGTTCCTCTTGGACTGGGTGCGAGTGGCTTGAAGTGTAAGGATCCAAAACAGAGGAGAACCAGACCGCAACATCCTTTAAGTAATGGTGCTGATGATGGATCAGCCAGTTCTTCAGGCAATCAAAATCAGCAAGCCAGGACAAGTGGTCATAATGTATTGCAAGCTCTTGCAAGTTATGGAACTTCTATGAGCCAGAGAAATGCTAATGGTCCATCCCAAGTGCCCGCTTCCCCTGGTGATGGCCAGATTGATGTGGCGGGTGTTATGTCTCAGGTCTTGCACAGCCCAGCTTTGAATGGTTTGTTGACAGGGGTTTCACAGCAGACTGGAGTCGGCTCACCTGATGTCTTGAGGAACATGTTGCAGCAGTTCACACACAGCCCACAGATGAGGAACACCGTCAATCAAATTGCCCAACAGGTTGGCAGTCAGGATATGGGGAATATGTTTGTTGGAATGGAAAGAGGGCAAGGTAGTGGCATTGACTTTTCAAGGATGCTTAAACAGATGATGCCCATTGTATCTCAAGCTCTTGGAGGTGGAATTCCTCCTCAGTCATTCTCTGCTGAAAGGAGAGATCCCCAGGCACTCTTTGGAGATGGAACGCATAGCAGAGAAGAAAATATTGATGACCGAAGCTTACAGATCAATCTTCAACCAGTGGTAGAGAGGATGGAACACCTTAGTGCACAGTCAGATGTTTTCCGTGCGGTGGTTGAAAATGCTATCCAGCTATCCAGGGGGGGAAGTTCTTATGATGGTCTTCTGGATGAGTTGTGTAGCAATGAGTGTCTTGCCGGTGACTATGTGGAGATGTTACGACATGATGTGAATCAGCGACTGAATGGGGTTTCTGGGCAAGACTAG	2889	0.4614	MHTVVTTCKRFASSLCFANWCLQRSSPASTKLRNAATLRSQQLNPFLSFRSILSVAPSNPPLCFLSYFEIVLVALSSNDCPSASNVSAELSDSTVQLNIKTLDSHIYSFHVDKNMLVSILKEKIANKVGVPVGQQRLIFRGKVLKDNHVLSEYHIENGDTLHLVQRQLNQSQAPGTSFGETTGTSGNRGNDASSGAHHNRVGQISHSVVLGTFNVGEQGEGIVPDLSRVIGAVLNSIGIGGQSTGGVTNGTQSSSPNPSTQGPSGNEAGGMHLENQNQSGNQTQTGQAFPNQPFQSLPQVVQIPLAAGSITVPSLSAPIPHSLNTLSEFVNRMEQTLSQNGYQTNSSSLSGGEQTHVELPSNPQGLPTVEALSAVLHRAERLLSGHAIAALSHIAGRLEREGTTSDQNIRGQIQSESMQIGLAMQHLGAFLLELGRTILTLRMGQSSAESAVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGSVPSSTPATFGTVGVGNAPRNVNIHIHAGTSLAPIVSAIGSRPNNGEGAQNERHNTHGSGDLGSMRDLAVRNIIAAAVPAYPPGAGTSSGMQSSGQAESINRDLPVGRESRPTPGNEQLDTMEANAVEASSLSSVACTSESGVHKPQPEAAQTSNNEGRDVLSPTFGSTSSNGQENAQSAGEKHVTDNAKAVPLGLGASGLKCKDPKQRRTRPQHPLSNGADDGSASSSGNQNQQARTSGHNVLQALASYGTSMSQRNANGPSQVPASPGDGQIDVAGVMSQVLHSPALNGLLTGVSQQTGVGSPDVLRNMLQQFTHSPQMRNTVNQIAQQVGSQDMGNMFVGMERGQGSGIDFSRMLKQMMPIVSQALGGGIPPQSFSAERRDPQALFGDGTHSREENIDDRSLQINLQPVVERMEHLSAQSDVFRAVVENAIQLSRGGSSYDGLLDELCSNECLAGDYVEMLRHDVNQRLNGVSGQD	962

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g2054	962	MobiDBLite	consensus disorder prediction	597	666	-	-
	Lele27g2054	962	MobiDBLite	consensus disorder prediction	520	547	-	-
	Lele27g2054	962	MobiDBLite	consensus disorder prediction	696	722	-	-
	Lele27g2054	962	MobiDBLite	consensus disorder prediction	244	292	-	-
	Lele27g2054	962	Pfam	Ubiquitin family	97	167	IPR000626	GO:0005515
	Lele27g2054	962	SMART	ubq_7	95	166	IPR000626	GO:0005515
	Lele27g2054	962	FunFam	Large proline-rich protein BAG6	87	180	-	-
	Lele27g2054	962	PANTHER	LARGE PROLINE-RICH PROTEIN BAG6	82	960	-	-
	Lele27g2054	962	SUPERFAMILY	Ubiquitin-like	90	168	IPR029071	-
	Lele27g2054	962	MobiDBLite	consensus disorder prediction	567	722	-	-
	Lele27g2054	962	MobiDBLite	consensus disorder prediction	341	363	-	-
	Lele27g2054	962	CDD	Ubl_ubiquitin_like	97	164	-	-
	Lele27g2054	962	MobiDBLite	consensus disorder prediction	569	583	-	-
	Lele27g2054	962	PRINTS	Ubiquitin signature	147	168	IPR019956	-
	Lele27g2054	962	PRINTS	Ubiquitin signature	126	146	IPR019956	-
	Lele27g2054	962	MobiDBLite	consensus disorder prediction	170	198	-	-
	Lele27g2054	962	ProSiteProfiles	Ubiquitin domain profile.	95	170	IPR000626	GO:0005515
	Lele27g2054	962	Gene3D	-	83	177	-	-
	Lele27g2054	962	MobiDBLite	consensus disorder prediction	526	541	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g2054	Lele-ChrLele27	24495269	24504655	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g2054	95	166	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	41.667	1.42e-11	61.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele25g0034	25	195578	200844	Lele27g2054	27	24495269	24504655	hybridization
	Lele26g0039	26	225743	233579	Lele27g2054	27	24495269	24504655	hybridization