Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g2047 ATGTCGCCGGCGGAGAACAACAGGGGATGGAATGCGGAGGAAGGCAAGCATTACCCTTCCCCACTCGCGTCGCATGAGGACGTGGTCAAGGACCCCACCCTATTCTGGGACACTCTCCGGCGTTTCCACTTCCTCATGGGTACAAAGTTCATGATTCCTGTGATTGGAGGCAAGGAACTGGATTTGCACGTTCTTTACGTGGAGGTTACGAGTAGGAGTGGTTATGAGAAGGTGGTGGCAGAGAAGAAATGGAGGGAAGTGGGGAACGTGTTCAGGTTCTCTCCCACCACGACCAGTGCTTCGTTCGTAATGAGGAAACACTACTCGAGTCTTCTCTACCATTACGAACAAGTCCACTTCTTTAAGGCTCGGGGTCCTCTGTACACCCCATCTGCAGCTGCATTTTCGGTCAGCAACCAGTCATGGAGACCCGAATTGGCTATTGTGGAATACTCACCCCAGCGGATAAACGAGTGTCCCGAATCCCATGACGAAGATGATTGGGGCGGAGAGGTGAAGGGAATGATAGAGGGGAAATTCGATTGTGGGTATTTGGTGTCAGTGAAGGTGGGGACAGAAGTTCTGAGAGGGGTGCTTTACCATCCACAGCAATCGGAAACTCCGCAGAGTACGAATGCTATGGTGGCCTACAATGGAAAAGGAGGGCGCGCGGGTAGGAGGAGGAGGAACAGAAGGAGGTGGGACCCAAACTACCCGAAGCCCAACAGAAGTGGGTATAACTTCTTTTTTGCGGAGAAGCATTACAAGCTGAAAGCCCTCTATCCCAACAGAGAGAGGGAATTTACAAAGATGATCGGCCAGTCATGGAGCAGTCTTAGCCACGAGGAGAGAATGGTATACCAGAACATTGGGATGAGAGACAAGGAAAGGTACAAGAGAGAGCTGAGGGAGTACAAGGAGAAAAAGAAGCTCGCTCCCGCCGTGGGGCTTTCCAGTATTTAA 963 0.5151 MSPAENNRGWNAEEGKHYPSPLASHEDVVKDPTLFWDTLRRFHFLMGTKFMIPVIGGKELDLHVLYVEVTSRSGYEKVVAEKKWREVGNVFRFSPTTTSASFVMRKHYSSLLYHYEQVHFFKARGPLYTPSAAAFSVSNQSWRPELAIVEYSPQRINECPESHDEDDWGGEVKGMIEGKFDCGYLVSVKVGTEVLRGVLYHPQQSETPQSTNAMVAYNGKGGRAGRRRRNRRRWDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWSSLSHEERMVYQNIGMRDKERYKRELREYKEKKKLAPAVGLSSI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g2047 320 MobiDBLite consensus disorder prediction 216 239 - -
Lele27g2047 320 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Lele27g2047 320 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677
Lele27g2047 320 Gene3D - 20 125 IPR036431 GO:0003677
Lele27g2047 320 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Lele27g2047 320 CDD HMGB-UBF_HMG-box 239 303 - -
Lele27g2047 320 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 311 - -
Lele27g2047 320 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 239 306 IPR009071 -
Lele27g2047 320 SUPERFAMILY HMG-box 236 308 IPR036910 -
Lele27g2047 320 SMART ARID_2 26 116 - -
Lele27g2047 320 Pfam HMG (high mobility group) box 239 306 IPR009071 -
Lele27g2047 320 SUPERFAMILY ARID-like 24 128 IPR036431 GO:0003677
Lele27g2047 320 SMART bright_3 30 121 IPR001606 GO:0003677
Lele27g2047 320 SMART hmgende2 238 307 IPR009071 -
Lele27g2047 320 Gene3D High mobility group box domain 223 314 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g2047 Lele-ChrLele27 24449083 24450878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g2047 16 311 ARID Transcription Factor Family AT1G76110 65.147 1.06e-132 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele27g2047 ARID 4.8e-17 CL0123