Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g2040 ATGGGGTTATGCTTCAGCAAATCCTCCTCAGATTCGCCAGCCCATCGTCACTACCAGCAGCTCCCAAAGAGGAATTACCAGCATCCTACCCCACACTCCGCCCCCTCTTCCTCCTCTTCCTCCCACCCTCAAGTCGGTCCCGTTTTGGGCAAACCATATTTTGACATCAAAACGCTCTACACTTTGGACAGAGAATTGGGAAGAGGCCAATTCGGCATCACTTATCTCTGCACCGAGAAGCTCACCGGACTCAAGTACGCCTGTAAGTCCATATCCAGGAGAAAGCTGACCAGCCGCAAGGGAATCGACGATGTGAAGAAGGAAATTATGATCCTGCAGCACCTCACGGGGCAGCCCAACATTGTGGAATTCAAGGGAGCTTACGAGGACTGGCATCACGTGCATTTGGTCATGGAGTTGTGTTCCGGCGGGGAGCTTTTTGATCGGATTATTGCCAGAGGGGTTTACTCGGAGGACGAAGCTGCCGTCATATTCAGGCAAGTTGTAAACGTGGTTCACGTTTGTCATTTCATGGGCGTGATTCATAGGGACCTTAAGCCCGAGAATTTCTTGTTGGCCACGAGGGACCCCAATTCTCCCTTGAAAGCCATGGATTTTGGCCTCTCTGTCTTCATTGAGCCAGGTAAAGAGTATAAGGAAGTTGTGGGAAGTGCGTATTATGTGGCGCCGGAGGTTCTAAAACGGAGTTATGGAAAGGAGATAGATGTGTGGAGTGCAGGAGTCATTTTATACATCCTCCTTAGTGGGGTGCCTCCATTTTGGGCTGAGAACGAGAAAGGCATATTTGATGCTATTCTGGACGGCAAACTGGATCTTGAAAGCCAACCATGGCCTTCTATTTCAGCTTCCGCCAAGGATTTGATCAGGAAAATGTTGACATATGATCCCAAGAAACGCATCACAGCTGCTGATGCCCTTGAACATCCATGGATGAAGGTGGGTGGTCAAGCATCTGACAAACCTATAGACAGTGCCGTTTTAATAAGGATGAAACAGTTCAGAGCAATGAACAAAATGAAGAAACTTGCCCTGAAGGTGATAGCAGAAAACCTCTCAGAGGAAGAAATCAAGGGCTTGAAACAAATGTTCAACAATATGGATACAGATAACAGTGGCACGATCACACTTGAAGAACTCAGAGCTGGATTGACCAAATTGGGGTCTAAACTGAACGAATCTGAGATACGGCAGCTGATGGATGCTGCTGATGTTGACAAGAATGGAACTATTGATTATTATGAATTCATAACTGCCACCATGCATCGGCATAGACTCGAGAAGGAAGAGAACTTGTTCAAGGCCTTCCAATACTTCGACAAGGATAACAGTGGATTTATCACAAGAGAGGAGCTTAGGCAGGCTTTGACTGAATATGGGATGGGGGATGAAGCTACGATAGATGAAGTGATTGAAGATGTGGACACTGATAAAGATGGCAGAATCAATTACGAGGAGTTCGTGGCTATGATGAAGAACGCGGGATAA 1506 0.4695 MGLCFSKSSSDSPAHRHYQQLPKRNYQHPTPHSAPSSSSSSHPQVGPVLGKPYFDIKTLYTLDRELGRGQFGITYLCTEKLTGLKYACKSISRRKLTSRKGIDDVKKEIMILQHLTGQPNIVEFKGAYEDWHHVHLVMELCSGGELFDRIIARGVYSEDEAAVIFRQVVNVVHVCHFMGVIHRDLKPENFLLATRDPNSPLKAMDFGLSVFIEPGKEYKEVVGSAYYVAPEVLKRSYGKEIDVWSAGVILYILLSGVPPFWAENEKGIFDAILDGKLDLESQPWPSISASAKDLIRKMLTYDPKKRITAADALEHPWMKVGGQASDKPIDSAVLIRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDNSGTITLEELRAGLTKLGSKLNESEIRQLMDAADVDKNGTIDYYEFITATMHRHRLEKEENLFKAFQYFDKDNSGFITREELRQALTEYGMGDEATIDEVIEDVDTDKDGRINYEEFVAMMKNAG 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g2040 501 MobiDBLite consensus disorder prediction 1 45 - -
Lele27g2040 501 FunFam Calcium-dependent protein kinase 1 326 501 - -
Lele27g2040 501 Gene3D Phosphorylase Kinase; domain 1 62 145 - -
Lele27g2040 501 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g2040 501 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Lele27g2040 501 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Lele27g2040 501 MobiDBLite consensus disorder prediction 23 45 - -
Lele27g2040 501 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Lele27g2040 501 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Lele27g2040 501 PANTHER SERINE/THREONINE-PROTEIN KINASE 55 493 - -
Lele27g2040 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Lele27g2040 501 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Lele27g2040 501 ProSiteProfiles EF-hand calcium-binding domain profile. 469 501 IPR002048 GO:0005509
Lele27g2040 501 Gene3D - 325 500 - -
Lele27g2040 501 MobiDBLite consensus disorder prediction 1 16 - -
Lele27g2040 501 Pfam EF-hand domain pair 366 426 IPR002048 GO:0005509
Lele27g2040 501 Pfam EF-hand domain pair 435 498 IPR002048 GO:0005509
Lele27g2040 501 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Lele27g2040 501 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Lele27g2040 501 CDD STKc_CAMK 60 317 - -
Lele27g2040 501 FunFam Calcium-dependent protein kinase 1 62 145 - -
Lele27g2040 501 Pfam Protein kinase domain 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g2040 501 SUPERFAMILY EF-hand 357 497 IPR011992 -
Lele27g2040 501 SMART efh_1 401 429 IPR002048 GO:0005509
Lele27g2040 501 SMART efh_1 365 393 IPR002048 GO:0005509
Lele27g2040 501 SMART efh_1 437 465 IPR002048 GO:0005509
Lele27g2040 501 SMART efh_1 472 500 IPR002048 GO:0005509
Lele27g2040 501 FunFam calcium-dependent protein kinase 1 146 325 - -
Lele27g2040 501 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Lele27g2040 501 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g2040 501 SUPERFAMILY Protein kinase-like (PK-like) 60 319 IPR011009 -
Lele27g2040 501 Gene3D Transferase(Phosphotransferase) domain 1 146 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g2040 Lele-ChrLele27 24421674 24425258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g2040 34 500 EF-hand Containing Proteins AT3G20410 71.092 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele27g2040 Pkinase 3.6e-73 CL0016