Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g2021 ATGGCTAACCCTCGGGTCTTCTTTGACATCTCCACCAACGGATCCCCTGCTGGTTGCATCGTCATGGAACTCTACGCCGACACTACCCCCCGCACCGCCGAGAACTTCCGTGCCCTTTGCACCGGCGAGAAGGGCACTGGTCGCAGCGGCAAGCCCCTCCATTACAAGGGCTCCAGTTTCCACCGCATCATCCCCGGCTTCATGTGCCAGGGTGGCGATTTCACTGCCGGAAACGGCTCCGGTGGCGAGTCCATCTATGGGTCCAAGTTTGAAGACGAGAATTTCATCAAGAAGTACACCAGTCCCGGAGTTCTATCCATGGCCAATGCTGGCCCCGGCACCAATGGATCTCAGTTCTTCATCTGTACGGCCAAGACGGAGTGGCTCGATGGCAAACACGTGGTGTTTGGGCAAGTCGTGGAGGGCATGGAGGCGGTCAAGGCGATAGAGGCTGTCGGATCTTCCTCCGGCAAAACCTCCAAGCCCGTTGTCATTGCCGACTGTGGCTAG 510 0.5824 MANPRVFFDISTNGSPAGCIVMELYADTTPRTAENFRALCTGEKGTGRSGKPLHYKGSSFHRIIPGFMCQGGDFTAGNGSGGESIYGSKFEDENFIKKYTSPGVLSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGQVVEGMEAVKAIEAVGSSSGKTSKPVVIADCG 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g2021 169 CDD cyclophilin_ABH_like 4 169 - -
Lele27g2021 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Lele27g2021 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Lele27g2021 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Lele27g2021 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Lele27g2021 169 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Lele27g2021 169 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 169 IPR002130 GO:0000413|GO:0003755
Lele27g2021 169 Gene3D - 1 169 IPR029000 -
Lele27g2021 169 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 169 - -
Lele27g2021 169 PIRSF Peptidylpro_ismrse 1 169 IPR024936 GO:0003755
Lele27g2021 169 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Lele27g2021 169 SUPERFAMILY Cyclophilin-like 2 169 IPR029000 -
Lele27g2021 169 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 169 IPR002130 GO:0000413|GO:0003755
Lele27g2021 169 FunFam Peptidyl-prolyl cis-trans isomerase 1 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g2021 Lele-ChrLele27 24316873 24317382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g2021 18 152 U-box Gene Family AT5G67530 47.794 1.14e-28 108