Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g2000 ATGGCTTTCGTCGAAGATAAGATTAAAACCGGAGGATTCATTGTTGGGGGTCAATCTCTAGCTGCTGAGATGAAGATGTTGAAAGAAATGCAGGATCAATCTGGGGTCCGAAAGAGTATAAATTCCGAGTTATGGCATGCTTGCGCTGGTCCACTCGTAAGCTTGCCTCAGGTGGGGAGTCTGGTGTATTACTTTCCTCAGGGACACAGTGAACAGGTGGCGGCTTCCACTAGAAGAACAGCAACCTCACAGATTCCAAACTATCCGAATCTTCAATCTCAGTTGCTTTGTCAAGTTCAAAATGTTGCACTTCATGCAGATAAAGACACGGACGAAATATACGCTCAAATGAGTCTCCAACCATTGAATTCTGAAAAAGATGTCTTTCCTATATCTGATTTTGGGATGAAGCCTAGTAAACATCCAAGTGAATTTTTCTGCAAAACATTGACTGCTAGCGATACAAGCACGCACGGTGGCTTTTCTGTACCTCGGAGAGCTGCAGAAAAGCTCTTTCCTCCACTGGATTATACCATTCAACCACCAACACAAGAACTCGTTGTCCGAGACTTACATGATAATATCTGGACATTCCGACATATTTACCGGGGTCAGCCGAAGAGACATCTTCTCACAACAGGATGGAGCTTATTTGTTGGCTCAAAGAGGCTTAAAGCTGGTGATGCTGTTCTTTTTATCAGGGACGAGAAATCACAATTGCTAGTTGGTGTTAGGCGTGCAAATCGTCAACAGACAACATTGCCGTCATCTGTCCTTTCTGCTGATAGCATGCATATTGGTGTGCTAGCTGCCGCAGCTCATGCTGCTGCTAATCGTAGCCCGTTTACCGTTTTCTACAACCCAAGGGCATGCCCTTCAGAATTTGTTATTCCGCTGGCTAAATACAGAAAAGCTGTGTACGGTACCCAACTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGGAAGCGCAGGTATATGGGCACTATAGTTGGTACCAGTGACTTGGATCCTTTGAGGTGGCCTGGTTCGAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGCGATAAGCAGAATAGAGTTAGTGCTTGGGAAATTGAGACTCCTGAAAGTCTTTTTATCTTTCCTTCTTTGACTTCGAGTCTGAAACGACCATTTCAATCTGGAACTTTTGGTACAGAAAATGAGTGGGGGGCTTTGTTAAGAAGGCCTTTTATACAAGTTCCTGAAAATGCAAATTTGGAGCTCCCAAACTCTTTACAAAATCTATATATGGAACACCTGATGAAAGTTCTTTTTAAACCTCAACTGGTGAACAATCCTGGAGCCTTCTCATCAGTCATGCAGCAAGAATCTCCCGCCAAGAGTGATCTTTCACAAGATTTGAAGAAGACACTCGCGACAGATAACCGAAAAGCTAGTATTGTATGTTCAGGCATACCGCCAAAAGATCTAGATCATTCTCAATCTCTCCCTGATCAATCTAATGCTTTCAACTTGCACTCACTTTTGAAAAGTGATCAAACCGGGAAATTGCATCCTCTGCCTAAAATTGAGAATGCTCAATCTTCTGGAGCAGTTTCTGATAAAACAAAAGTAGAATCTGTGGACTTAACTGATCATGTTATTGACTGTCCTTCAATAGAAGGATGCAACATGGAAAAAGTGGCCGCGAACCCTATGAACCCACCAGGCCATGCGAGTCAAATGGCATTGCTTAATCAAAACCAGAGTCCATGGCCCCCGCAGCCTCAGTTCGAATCAACAATATCTCCTTCTCAGATGGTTGATATTCCTCAACCTGATTATGCTCTTTTAAATGGCCTTCTTCCTCAGGCAGACGTTGATGAATGGATGTTGTATTCCTCCTGCCAATCTTTTCCTGGAGTGAGTAGATCAGCTGGGCCTTTGCAGGAACAGTCTCTACTTCTCCCACAAGCAGTTAATACCCCTTTACCCTCTGCGAGTCAAGAAATGTGGGATCATTATCTTAGAAATTTCAAGTCGTCACCTCAAGCGGACCAGTTAACACCCATATCACAGCAAGGGTTGCAGAACTTTAATTGTATATCTAATTCAAACAATCTGAGGGATCTATCAGCTGAGAGCATTAATCAAAGCGGGGTGTATAGTAGCGTCAATGTTGATGCCAGTAACAGTGTAAGTACCATGGTTGATCCTTCAACTTCGAGTACCATTTTGGATGATTTTTGCGTATTGAAGGATGGGGAGTTCCAGAACCCATCAGATTGCATGCTTGGCAACGTAAGCTTGAGCCAGGACGTCCAGTCTCAGATAGCCTCCGCAAGTCTAGCCGAGTCACATGTTCTCTCTCTGCAAGACAACTCAGGTGGTGGTACATCTTCGAGCCACGTTGATTTCGATGAAAGCAGCTTTCTGCAGAATAACTCATGGGCGCAAGTTGCTGCACCCGTGCGAACCTACACCAAGGTTCAGAAGGCAGGGTCAGTAGGAAGATCCTTGGATGTAACCACTTTTAAGAACTACGGGGAACTGATCTCCGCAATTGAACGGATGTTTGGACTTGAGGGTCTGCTGAACGACACCAAAGGTTCAGGATGGAAATTGGTATATGTAGATTATGAAAACGATGTTCTGCTCGTCGGGGATGATCCTTGGGAGGAATTCGTGGGATGTGTCCGGTGCATCAGGATTTTATCGCCTGTTGAAGTAAAACAGATGAGCGAGGAGGGAATGAAGCTTCTGAACAGTGCTGCGGCCGTGCAACAGTTGAATGGACCCATGTCAGTCTCTCAAGTAAAGGCATTTGTTGTGGATGTATATGAGCTTTTCTCATTTATGAAGGTGACAAGCAATGTCTTCAAGGTTATCCATATGTAG 2889 0.4444 MAFVEDKIKTGGFIVGGQSLAAEMKMLKEMQDQSGVRKSINSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLQSQLLCQVQNVALHADKDTDEIYAQMSLQPLNSEKDVFPISDFGMKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTVFYNPRACPSEFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGTSDLDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSAWEIETPESLFIFPSLTSSLKRPFQSGTFGTENEWGALLRRPFIQVPENANLELPNSLQNLYMEHLMKVLFKPQLVNNPGAFSSVMQQESPAKSDLSQDLKKTLATDNRKASIVCSGIPPKDLDHSQSLPDQSNAFNLHSLLKSDQTGKLHPLPKIENAQSSGAVSDKTKVESVDLTDHVIDCPSIEGCNMEKVAANPMNPPGHASQMALLNQNQSPWPPQPQFESTISPSQMVDIPQPDYALLNGLLPQADVDEWMLYSSCQSFPGVSRSAGPLQEQSLLLPQAVNTPLPSASQEMWDHYLRNFKSSPQADQLTPISQQGLQNFNCISNSNNLRDLSAESINQSGVYSSVNVDASNSVSTMVDPSTSSTILDDFCVLKDGEFQNPSDCMLGNVSLSQDVQSQIASASLAESHVLSLQDNSGGGTSSSHVDFDESSFLQNNSWAQVAAPVRTYTKVQKAGSVGRSLDVTTFKNYGELISAIERMFGLEGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPVEVKQMSEEGMKLLNSAAAVQQLNGPMSVSQVKAFVVDVYELFSFMKVTSNVFKVIHM 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g2000 962 SMART B3_2 146 248 IPR003340 GO:0003677
Lele27g2000 962 CDD B3_DNA 145 246 IPR003340 GO:0003677
Lele27g2000 962 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele27g2000 962 FunFam Auxin response factor 818 911 - -
Lele27g2000 962 FunFam Auxin response factor 144 248 - -
Lele27g2000 962 Gene3D - 310 382 - -
Lele27g2000 962 SUPERFAMILY CAD & PB1 domains 826 901 - -
Lele27g2000 962 Gene3D - 144 247 IPR015300 -
Lele27g2000 962 FunFam Auxin response factor 310 382 - -
Lele27g2000 962 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 912 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele27g2000 962 SUPERFAMILY DNA-binding pseudobarrel domain 134 275 IPR015300 -
Lele27g2000 962 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Lele27g2000 962 ProSiteProfiles PB1 domain profile. 822 906 IPR000270 GO:0005515
Lele27g2000 962 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Lele27g2000 962 Pfam AUX/IAA family 819 907 IPR033389 -
Lele27g2000 962 Gene3D - 818 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g2000 Lele-ChrLele27 24211575 24216843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g2000 19 922 B3 DNA Binding Superfamily AT1G19850 59.634 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele27g2000 AUX_IAA 1.1e-09 CL0072