Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1989 ATGAAGATCCTCTGCGACGTCTGTAATAACCACGAGGCTTCCCTATTCTGCACCGCCGACGAAGCCGCCCTATGTGATGCCTGCGACCACCGGGTCCACCATGCCAACAAGCTCGCCTCCAAGCACCAACGCTTTTCTCTTCACCGCCCTTCTCCCAACCAATTCCCTCTCTGCGATATTTGCCTGGAGAGAAGAGCCTTCGTGTTCTGCCAACAGGACAGAGCAATTCTATGCAAAGATTGTGACACGCCGATTCACTCGGCCAACGAGCACACCCGGAAGCACAATAGGTTTCTTCTAACGGGGATTAAGCTCTCTGCTGCTGCTACGCCTTATTCACCATTATCCTCCAATCCCGTTTTGACAAATGGTTCGGATTCCCTGTCTAATTCGAAGTTCCAGAATTTAGCGAAGAACTCTGTTTCTGCTCCTTCTGCCGTCTCACATCCCTCTTCAGTGAACAAGACCTCACCTTCAACAGCATCAACCCATACCACAATTAACAAGGCTGGGGGAAACTTGTCAACGAACGAAGGGATTGTTTCCACGAGTAGCATATCTGAGTATTTGATAGAGACTCTCCCTGGCTGGCAGGTCGACGACTTTCTCGATTCTTCTGCTGTTCCGTTTGGTTTCAGCAAGAGTGTTGATATGTTGTCTGCGTTCGATGCTGATATTGAGGGAAATATGGGTTCTCTCTCCCCCGAGAGTATGGGGATCTGGGTTCCTCAGGCACCCACTTCTCTGTTTACCCCACAAGTGGATCGGCAGATCAAGTTCCAAGAGACAAAAGAGGCGACCAATATTGAGGCCAGCAGATCATCAAGGTCGAGGGATGATAATTTCATAGTCCCACAAATCAACCCTCCTATTGGTTCCAAGAGATCCAGACTTCTTTGAGATGGATATGATGATGGAGATGGGATTAGGGGGAGAAAGAGACAGTGGGGTGGGGGCATGAGAGGCGAAAAGGGATTGAATGGATGGCATATGGATTTGTCTGAACGTGAAAATTCATGTGGGGGGTCAACCCTCTGTCCATCATTGTATTTTCGTTTCAGAAATGGAAAGTTGGTAAGTAATGCCTTGTGGGTTAGGACTCACGGCACATCTCTCATTCTGCAACTTCACCGCACAGTAACACTTGACCGCATTCGCGTTTTTGTATCCAATCACTGCAATATGATTACTTAA 1194 0.4832 MKILCDVCNNHEASLFCTADEAALCDACDHRVHHANKLASKHQRFSLHRPSPNQFPLCDICLERRAFVFCQQDRAILCKDCDTPIHSANEHTRKHNRFLLTGIKLSAAATPYSPLSSNPVLTNGSDSLSNSKFQNLAKNSVSAPSAVSHPSSVNKTSPSTASTHTTINKAGGNLSTNEGIVSTSSISEYLIETLPGWQVDDFLDSSAVPFGFSKSVDMLSAFDADIEGNMGSLSPESMGIWVPQAPTSLFTPQVDRQIKFQETKEATNIEASRSSRSRDDNFIVPQINPPIGSKRSRLLXDGYDDGDGIRGRKRQWGGGMRGEKGLNGWHMDLSERENSCGGSTLCPSLYFRFRNGKLVSNALWVRTHGTSLILQLHRTVTLDRIRVFVSNHCNMIT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1989 397 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele27g1989 397 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lele27g1989 397 Pfam B-box zinc finger 55 93 IPR000315 GO:0008270
Lele27g1989 397 Gene3D Classic Zinc Finger 1 99 - -
Lele27g1989 397 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Lele27g1989 397 MobiDBLite consensus disorder prediction 261 296 - -
Lele27g1989 397 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lele27g1989 397 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele27g1989 397 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 290 - -
Lele27g1989 397 MobiDBLite consensus disorder prediction 143 170 - -
Lele27g1989 397 CDD Bbox1_BBX-like 57 100 - -
Lele27g1989 397 FunFam B-box zinc finger protein 21 1 98 - -
Lele27g1989 397 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1989 Lele-ChrLele27 24124197 24126161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1989 1 298 C2C2-CO-like Transcription Factor Family AT1G75540 44.575 1.46e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele27g1989 zf-B_box 1.2e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0097 25 593852 595005 Lele27g1989 27 24124197 24126161 hybridization
Lele26g0105 26 597360 598509 Lele27g1989 27 24124197 24126161 hybridization