Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1986 ATGACCTCTATGAGGCGTGTGAGCCGTCCGATCAGGGGGAGTGATGATGAAAAGCAAGATTTGAGCGGCGATGGACACGCCCGTGAGAAAATGCCCGACGCAGGGAAACTTCTCTTCTATGGATTGTATGCCTCAATTGGACACTGTTTCAGCTTGTGGGTGCAACAAATGGCTGACTTCTTCTCTCTAGGCCCACAGAACAAACAAGAAGAAGAAAAGGAAGATAACAACAACAGTAACAGCCTATTCTTGTTCAGGAACGAGGAGATCTACAACAAAGGATTCGAGATATGGCCGCAGTCCTATCAACCTCATCACAACTTCAACAACTACTACTCGTTTGGGGCGGGTCCTAGTCGCAGAAACTCCTCCAACGACGACGTCGTCTCTGACGACTCCACGAGGTTCGGATTCACGGTCATGTGGTCTGGAGGTCTAGGGGGTGGCATGAACTGTCAGGATTGTGGCAACCAAGCTAAGAAGGACTGTGCACATCTCAGATGCAGGAATTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCCGCGGCTAAACGCCGTGAACGACAGCAACAACTCCCTACGTTGCAGCAACAGCAGCAGGACCAACAATTTAGGGGAGATAATTCCAAACGACACAGAGAAAAGCAAGCTTCGGGCTCTCTCGCCTGCGCTCCATTAATGCCAATTGCGACAACAGGGTTGGAACTGGGACAATTCCCACCAGAGGTGAACTCTTCGGCCGTGTTTCGCTGTGTGAGAGTAAGCGCAATGGACAGCCCAGAGGACCAGTACGCGTATCAAACCGCTGTGAACATCGGTGGTCACCTTTTCAAGGGAATTCTGTATGACCACGGCCCAGAAGGTGCATACACCACAGGGGGTGAGAGCTCCTCCGGTGGAGCTGAAGCTCAACAATTAAATCTCATAACCGCGTCGACCACCACGAACACGGCGACAACCAGCGCCAACCCATTTGATCCATCTTCACTATACCCGGCTCCGCTCTATGCCTTCATGGCTGGTACGCAATTCTTCCCACCTCCTAGGTCCTAA 1077 0.5181 MTSMRRVSRPIRGSDDEKQDLSGDGHAREKMPDAGKLLFYGLYASIGHCFSLWVQQMADFFSLGPQNKQEEEKEDNNNSNSLFLFRNEEIYNKGFEIWPQSYQPHHNFNNYYSFGAGPSRRNSSNDDVVSDDSTRFGFTVMWSGGLGGGMNCQDCGNQAKKDCAHLRCRNCCKSRGFQCQTHVKSTWVPAAKRRERQQQLPTLQQQQQDQQFRGDNSKRHREKQASGSLACAPLMPIATTGLELGQFPPEVNSSAVFRCVRVSAMDSPEDQYAYQTAVNIGGHLFKGILYDHGPEGAYTTGGESSSGGAEAQQLNLITASTTTNTATTSANPFDPSSLYPAPLYAFMAGTQFFPPPRS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1986 358 MobiDBLite consensus disorder prediction 197 212 - -
Lele27g1986 358 MobiDBLite consensus disorder prediction 1 28 - -
Lele27g1986 358 Pfam Domain of unknown function (DUF702) 149 295 - -
Lele27g1986 358 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 246 294 IPR006511 -
Lele27g1986 358 MobiDBLite consensus disorder prediction 193 227 - -
Lele27g1986 358 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 151 193 IPR006510 -
Lele27g1986 358 MobiDBLite consensus disorder prediction 9 28 - -
Lele27g1986 358 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 57 343 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1986 Lele-ChrLele27 24099494 24101929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1986 57 358 C2H2 Transcription Factor Family AT1G75520 47.671 2.01e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele27g1986 DUF702 6.8e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1986 27 24099494 24101929 Lele01g0961 01 5552176 5553625 CCT
Lele27g1986 27 24099494 24101929 Lele03g0957 03 5572198 5576493 CCT
Lele27g1986 27 24099494 24101929 Lele04g0956 04 5916811 5918198 CCT
Lele25g0099 25 625259 627705 Lele27g1986 27 24099494 24101929 hybridization
Lele26g0109 26 624116 626566 Lele27g1986 27 24099494 24101929 hybridization