Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1971 ATGTCTCCAGTCGTCAGTGAAATCCTTCGTTCCGGGTTTATGATAAATTCCTCCCAAAGGCGCAGGACCCACTTAGTTCAGTCCTTCTCTGTTGTGTTCCTCTACTGGTTCTATTATCTGGTGCACATATCATATCTCATGGACTCGCCCAGTGGAAATTCCACCATGTGCACCAAATTTCAGAGCTCTGGTTCTGAAGAGGATTTGCAGGTTTTGATGGATCAGAGAAAGAGGAAGAGAATGCAATCGAATCGGGAATCGGCAAAACGATCCCGTATGCGAAAGCAGAAGCACCTGGATGATCTGATGGGCCAAGTGAGTGAGCTGAGAAAGGAAAATAGTGAAATCCTGACGAGCATAAACATCAACACACAACACTATGTGAAAGTTGAGGCCGAAAACTCCGTATTGAGGGCTCGAATGGCAGAACTTAGCCACAGGCTCCAATCACTGAACGATATCCTCAGCTACATAAACACCAGCACTGGGGTGTATGAAACCGATTGCTATTCAGTGAGAGCAGATAACTTTATGAATCCCATGGAGATGGCCTTTCTTAATCAGCCCATTATGGCTTCTGCAGACGTTTTTCAGTGGTGA 600 0.4567 MSPVVSEILRSGFMINSSQRRRTHLVQSFSVVFLYWFYYLVHISYLMDSPSGNSTMCTKFQSSGSEEDLQVLMDQRKRKRMQSNRESAKRSRMRKQKHLDDLMGQVSELRKENSEILTSININTQHYVKVEAENSVLRARMAELSHRLQSLNDILSYINTSTGVYETDCYSVRADNFMNPMEMAFLNQPIMASADVFQW 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1971 199 FunFam BZIP transcription factor 74 126 - -
Lele27g1971 199 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 74 137 IPR004827 GO:0003700|GO:0006355
Lele27g1971 199 Coils Coil 127 147 - -
Lele27g1971 199 Coils Coil 92 112 - -
Lele27g1971 199 SMART brlzneu 72 136 IPR004827 GO:0003700|GO:0006355
Lele27g1971 199 MobiDBLite consensus disorder prediction 75 97 - -
Lele27g1971 199 CDD bZIP_plant_GBF1 77 127 IPR045314 GO:0003700|GO:0006355
Lele27g1971 199 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 79 94 IPR004827 GO:0003700|GO:0006355
Lele27g1971 199 SUPERFAMILY Leucine zipper domain 76 129 IPR046347 GO:0003700|GO:0006355
Lele27g1971 199 Pfam bZIP transcription factor 76 122 IPR004827 GO:0003700|GO:0006355
Lele27g1971 199 PANTHER BZIP TRANSCRIPTION FACTOR 44 61 195 - -
Lele27g1971 199 Gene3D - 74 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1971 Lele-ChrLele27 23998261 23999057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1971 72 199 bZIP Transcription Factor Family AT4G34590 55.474 1.53e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lele27g1971 bZIP_1 6.2e-10 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0114 25 719950 720732 Lele27g1971 27 23998261 23999057 hybridization
Lele26g0124 26 726719 727180 Lele27g1971 27 23998261 23999057 hybridization