Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1958 ATGCCTTTCAAAGAATTTGTTCGTGAGCTCAGGGATATTCGGGATGGCATGGGAAATATTTCTGTAAGAGGGGTAGAAGCAAATCGCATCCCTTGCCGTGGAAGATCTCTTATTGCCCCTGAATTCTTCTCACCTGCTTCGTTAGTGACTCAGCAGAGCCCCTGGGCTAACTTACCACCTGAGTTGTTATTAGACATAATTCAGAGGGTGGAAGCAAGCGAAACTTCCTGGCCTGCCCGGCGGGCGGTTGTAGCTTGTGCCTCAGTTTGTAGGTCATGGAGGAAGATAACAGAGGAGGTGGTAAATACACCAGAACAGTGTGGTTGGCTTACCTTCCCCATAGCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCCATCCAGTGTTTTATAAAGAGAGAAAGGGCGACTTCGAAATATCTTTTATATCTTGGTCTAAGTCCAGCTCTCTCTGGGGATATGAGTAAACTGCTACTGGCAGCAAAGAAGATTAGACGGACCACATGTACAGAGTTTATAATATCCTTGGTTTCAGATGATTTTTCTAAAGCAAGCAATACTTACGTTGGAAAGCTGAGGTCTAATTTTCTGGGTACCAAGTTCATGATCTTGGATAGTCAACTCCCGCTTGATTCTTTCCTTCCGTTGACTAGTAAATTGCAGCAAAGAATCCATTCAAAGCAAGTTCTTCCAAGGGCTGCTGTAGCAAAGCATAATGTGGCCACGATATCATATGAGCTCAATGTTCTCCGCACAAGAGGTCCAAGGAGAATGCGGTGTACTATGCATTCAATTCCAGGGTCTGCCATCGAAGAAGGGGGCACTGCTCCTACTCCTTTGAAGTTTAATAGATGCCCTGATGAGCATTTATCTTCCACGCCCATTTCAAAAGAAAGAAAGCCAGGATTTGAGTGTGGCTCCAATAGCGAAGTTAAGCCCCCAGAATCGAACCACATGACAAAGGAGCCACTGATTTTGAAAAACAAAGCTCCTAGATGGCACGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGTGTTACAGTGGCCTCAGTAAAAAACTTCCAGCTCGTAGTTGCTGCAGAACCTGAACAAAATGTTTCAGCGGCAGAACAGGATAGAGTGATACTACAATTTGGGAAAATTGGAAAGGACATATTCACCATGGATTACCGTTATCCCCTCACTGCATTTCAAGCCTTTGCGATCTGCTTGAGCAGCTTTGACACCAAACCTGCTTGCGATTTGTTTGACCTTGCTTCAGTTCAGGCTTGGTGTTCAATTGGCAAGTTTGCTAAGCTATCAAATTCTCCATGCATGTTAAGGAGAATACAGAAGATGCTAGGCATTTGGCGGGGAGTAAGGTTGCGCCAAAAACCCCCAAGGCCTGCGATATTACAATTCCACGGGAATGGAATCATCAACATGGAAAGCATATATTCACGCTTTGGATGGGTCACATCGTCCCCACCAATGCAGCATAAAGGGTTGGAGAATGTCACAGTTTCTGACGTGCTACTCTCAAAGGGAGATAAAAAAGTCGGTTCATGGCTCTGGTGCCGAGTTGATGAAGCTGTTATTAATGCAATGAAGAACATGGCTGCGAACAATATTGGATCACTTGTGGTGCTGAAGCCTGAGGGTCATATAGCAGGAATCGTCACAGAAAGAGACTGCTTGAAGAAAATAGTGGCGAAAGGAAGATCTCCAGTGTACACACAAGTTGGTGAAATTATGACTGAAGAGAAAAATCTAATGACGGTGACCTCAGACATGAACATTCTACAAGCAATGAGAATTATGACAGAGAATCAGATAAGGCACGTGCCAGTAATTGATGGGAAAGTAGTGGGAATGATTTCGATGGTGGACGTGGTGAGAGCAGTAATGGAGCAGCAAACTGGAGAACTGAAGCGACTCAATGATTACATCAGAGGAGAATACTACTAG 1950 0.4477 MPFKEFVRELRDIRDGMGNISVRGVEANRIPCRGRSLIAPEFFSPASLVTQQSPWANLPPELLLDIIQRVEASETSWPARRAVVACASVCRSWRKITEEVVNTPEQCGWLTFPIALKQPGPRETPIQCFIKRERATSKYLLYLGLSPALSGDMSKLLLAAKKIRRTTCTEFIISLVSDDFSKASNTYVGKLRSNFLGTKFMILDSQLPLDSFLPLTSKLQQRIHSKQVLPRAAVAKHNVATISYELNVLRTRGPRRMRCTMHSIPGSAIEEGGTAPTPLKFNRCPDEHLSSTPISKERKPGFECGSNSEVKPPESNHMTKEPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVVAAEPEQNVSAAEQDRVILQFGKIGKDIFTMDYRYPLTAFQAFAICLSSFDTKPACDLFDLASVQAWCSIGKFAKLSNSPCMLRRIQKMLGIWRGVRLRQKPPRPAILQFHGNGIINMESIYSRFGWVTSSPPMQHKGLENVTVSDVLLSKGDKKVGSWLWCRVDEAVINAMKNMAANNIGSLVVLKPEGHIAGIVTERDCLKKIVAKGRSPVYTQVGEIMTEEKNLMTVTSDMNILQAMRIMTENQIRHVPVIDGKVVGMISMVDVVRAVMEQQTGELKRLNDYIRGEYY 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1958 649 MobiDBLite consensus disorder prediction 288 318 - -
Lele27g1958 649 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Lele27g1958 649 Gene3D - 495 648 IPR046342 -
Lele27g1958 649 PANTHER TUBBY-RELATED 49 413 - -
Lele27g1958 649 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Lele27g1958 649 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Lele27g1958 649 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Lele27g1958 649 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Lele27g1958 649 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lele27g1958 649 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Lele27g1958 649 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Lele27g1958 649 Pfam CBS domain 520 564 IPR000644 -
Lele27g1958 649 Pfam CBS domain 575 630 IPR000644 -
Lele27g1958 649 SMART cbs_1 584 630 IPR000644 -
Lele27g1958 649 SMART cbs_1 516 564 IPR000644 -
Lele27g1958 649 Pfam F-box domain 55 101 IPR001810 GO:0005515
Lele27g1958 649 ProSiteProfiles CBS domain profile. 579 637 IPR000644 -
Lele27g1958 649 SUPERFAMILY F-box domain 51 118 IPR036047 GO:0005515
Lele27g1958 649 CDD CBS_pair_bac_euk 520 627 IPR044725 -
Lele27g1958 649 Pfam Tub family 116 410 IPR000007 -
Lele27g1958 649 SUPERFAMILY Tubby C-terminal domain-like 104 415 IPR025659 -
Lele27g1958 649 Gene3D - 49 101 - -
Lele27g1958 649 Gene3D Tubby Protein; Chain A 113 415 IPR025659 -
Lele27g1958 649 SUPERFAMILY CBS-domain pair 498 645 IPR046342 -
Lele27g1958 649 ProSiteProfiles CBS domain profile. 507 571 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1958 Lele-ChrLele27 23922682 23926558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1958 1 415 TUB Transcription Factor Family AT2G18280 57.108 3.03e-159 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele27g1958 Tub 1.7e-101 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0127 25 795302 797283 Lele27g1958 27 23922682 23926558 hybridization