Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1951 ATGGCTGAGGTGCCAGACAATGATACTCTTGAAAGGGTCAAGCCTTCCACTGAACAGGACATTTCTGATGAGTTAGATCTGAAAATAAAGAAGTATCTGAGAGGAGAAGGTGCGAATTTGGAGGTTTTGAAAGACAAAAAACTGAAGGGTCAACTTTCTGTTAGAGAAGAGTTATATAGTAAATCTGCTAAAGTTGCTGCCAAGTCGGATAAGTGGCTTGGGCCCAGTGAGGGAGGTTATCTAGAGGCTGAAGGCATAGAGAAGACATGGAGGATCAAACAAGAGGCAATAGCTAAAGAAGTAGATATCTTAAGCTCAAGAAACCAATATGATATTATTTTACCAGAACTTGGTCCGTACACTTTGGAGTTTACTTCTAGTGGCCGGTATATGGCTATTGGAGGGCGTAAGGGCCATTTGGGAATTGTGGACTTGATGAATATGAGCCTAATCAAAGAATTTCAGGTTAGAGAAACAGTACGTGATGTGACATTCTTGCATAATGAGTTGTTTCTTGCTGCTGCGCAGAAAAAGTATACTTACATCTATGACCGTGCTGGCACTGAGGTTCACTGCCTTAAGGAACATGGTTCTGTGTTAAGGCTTCAGTTTCTAAGAAACCACTTCCTTCTGACTTCAATAAACAAGATTGGGCAGCTGCATTATCAGGATGTTACGACGGGTACAATGGTTGGTAATATTCGAACTGGTTTAGGTCGTACTGGTGTGATGCAAGTAAACCCCTTCAATGGGGTTGTTGCTTTGGGTCATTCTGGCGGTATGGTCACAATGTGGAAACCAACAAGCCCAGCTCCTATTGTCAAGATGTTGTGTCATCATGGTCCTCTCTCAGCTCTGGCATTTCACTCAAATGGACACTTAATGGCCACAGCTGGAAAAGATAAAAAAATAAAGCTTTGGGACTTGAGGAAATTTGAGGCTCTCCAGACACTACATGGCCATGCTAACACCTTGGATTTTAGTCAAAAAGGATTACTTGCATGTGGTACTGGATCTTTTATACAGGTTCTAGGTGATCATACTGGTTCGCAGAATTATTCTAGGTATATGACTCATTCCATGGTTAAAGGTTACCAAATAGCAAAGTTAATGTTTCGACCATATGAAGATGTTCTAGGTATAGGGCACTCCATGGGTTGGTCCAGCATTCTCATTCCAGGATCGGGAGAACCTAACTTTGATACATGGGTGGCTAATCCATTTGAAACATCTAAACAGAGGAGAGAGAAAGAAGTTCGCTCACTGTTGGATAAGCTGCCGCCTGAGACGATCATGTTGGACCCAAGCAAAATTGGTTCAGTAAAGCCTACTCAGAAAGAGAAGCTGGCAAAGAAGGGGAGGGAGGCGGAGATAGAAGCAGCTGTTGAAGCTGCCAAGGACATTAAAATGAAGAAAAAAACTAAAGGAAGAAGTAAACCAAGCAAGATGGCCAAGAAAAAGAAGGAAGCAATTGAGAAATTGAAGAGGCCTTTCTTGGAAGAAAAAATTAAGGAGGAAGCAATTTCTAGGAAGAAACAAAAAATCAGCGAGGAAGTTAGTTTACCAGAATCATTAAAGAGGTTTGCTGGTAGAAAACCAGCAACGTGA 1608 0.4179 MAEVPDNDTLERVKPSTEQDISDELDLKIKKYLRGEGANLEVLKDKKLKGQLSVREELYSKSAKVAAKSDKWLGPSEGGYLEAEGIEKTWRIKQEAIAKEVDILSSRNQYDIILPELGPYTLEFTSSGRYMAIGGRKGHLGIVDLMNMSLIKEFQVRETVRDVTFLHNELFLAAAQKKYTYIYDRAGTEVHCLKEHGSVLRLQFLRNHFLLTSINKIGQLHYQDVTTGTMVGNIRTGLGRTGVMQVNPFNGVVALGHSGGMVTMWKPTSPAPIVKMLCHHGPLSALAFHSNGHLMATAGKDKKIKLWDLRKFEALQTLHGHANTLDFSQKGLLACGTGSFIQVLGDHTGSQNYSRYMTHSMVKGYQIAKLMFRPYEDVLGIGHSMGWSSILIPGSGEPNFDTWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGSVKPTQKEKLAKKGREAEIEAAVEAAKDIKMKKKTKGRSKPSKMAKKKKEAIEKLKRPFLEEKIKEEAISRKKQKISEEVSLPESLKRFAGRKPAT 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1951 535 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Lele27g1951 535 Pfam WD domain, G-beta repeat 279 308 IPR001680 GO:0005515
Lele27g1951 535 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Lele27g1951 535 MobiDBLite consensus disorder prediction 509 525 - -
Lele27g1951 535 SMART BING4CT_2 355 435 IPR012952 -
Lele27g1951 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Lele27g1951 535 Gene3D - 116 217 IPR015943 GO:0005515
Lele27g1951 535 PANTHER WD-REPEAT PROTEIN BING4 12 529 IPR040315 -
Lele27g1951 535 MobiDBLite consensus disorder prediction 509 535 - -
Lele27g1951 535 Gene3D - 218 352 IPR015943 GO:0005515
Lele27g1951 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Lele27g1951 535 SUPERFAMILY WD40 repeat-like 115 382 IPR036322 GO:0005515
Lele27g1951 535 MobiDBLite consensus disorder prediction 469 490 - -
Lele27g1951 535 FunFam U3 small nucleolar RNA-associated protein 7 108 390 - -
Lele27g1951 535 SMART WD40_4 269 308 IPR001680 GO:0005515
Lele27g1951 535 SMART WD40_4 227 266 IPR001680 GO:0005515
Lele27g1951 535 SMART WD40_4 147 184 IPR001680 GO:0005515
Lele27g1951 535 SMART WD40_4 311 345 IPR001680 GO:0005515
Lele27g1951 535 SMART WD40_4 105 144 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1951 Lele-ChrLele27 23896745 23900819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1951 169 331 U-box Gene Family AT1G04510 25.714 2.11e-10 61.2