Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1943 ATGCCGCTGTCTTCAGTCCCAGCTCGTCTTACGCTTCTCGCTCTTTTCTCTGCCACCACCTTCTATTGTCTGTACAAATCTCGCCGCCTCAGACACTTGAAACTTCCCGTATATCATAAACGTACTCTTCCCAATACCAGAGGGAAGATTCTCTTCGTTTCTCAAACAGGTACTTCTAAATCCCTTGCTCAGCGTCTTCACCAGCTGCTGGCGGCCAACGCCCTTGCTTTCGACCTCGTCGACCCCAAGGACTACGAACCTGAAGACATTCCTAAAGAAACTCTTGTCCTCATCGTAGCTTCAACCTGGGAAGATGGAAAACCACCTCCAAGTGCCAAATTCTTTGCAACTTGGCTAGCTGAAAGTGCCAAGGATTTTAGGGTGGGCTCTTTGTTGCTTTCAAGGTGCAAATTTTCTATATTCGGCGTTGGAAGCCGAGATTATGGAGCCACTTTTAATGCTGTTGCAAGGGATTTGGCAGAGCAGATGAGGGCGTTGGGGGCGACGGAGATGCTTCCCGTGTGGGAAGGAGATGTCGACACGGGTGATATAGATGGGGTTTTTGATCTTTGGTGTGCAAAGGTAGTTAGCTTTTTGAAGGGTGCTGTTTTAGAAAATGGTGGGGTTTCTGAGTCCAATGTCGGTGAGAAATGCAATGCTCAAAGCCTTGAGGATTACGAAGAGGATTCAGAGGAAGAGAACGGTATGGAGTCGGAGATTGTTGATCTTGAGGACATTGCGGGTAAAGCTCCTACGAGGAAGTCAGCGCCAAGAGGTGAAACTAATGGGAAATTGGACGGCAAAAGAGAAATGGTGACTCCAGTGATTAGAGCGAACTTAGAAAAGCAGGGATACAAAATTATTGGTTCACACAGTGGTGTTAAAATTTGTAGATGGACCAAGTCACAACTTCGAGGTCGAGGTGGTTGCTACAAGCACTCATTTTATGGCATAGAGAGTCATAGGTGCATGGAGGCAACCCCTAGTTTGGCATGTGCAAACAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTGGGGAAAAGTTGGCAGTGGAAGATGGATGATCCAATAGAAATTGTAAATTCTGCAATAGACCTACATAAAAATATGATTAAGCAAATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTATCTGAAGGTCTCTCTCCTCGCCATTGTGCATTATCACTTGTTGGAGAACCTATCATGTATCCAGAGATCAATGCACTTGTAGATGAGCTGCATAAACGGCAGATTTCTACATTTCTAGTGACAAATGCACAGTTTCCAGAGAAGATCAAGTTACTGAAGCCTATCACCCAGTTATATGTCAGTGTAGATGCAGCTACAAAGGATGCCTTGAAGGCAATAGATAGGCCACTTTTTGGAGATTTCTGGGAACGATTCATTGATTCCTTGACTGCTTTAAAGGAGAAAGAGCAGCGAACTGTTTATCGTTTGACCCTGGTTAAAGGTTGGAACACAGATGAAGTGGATGCTTATTCTAAGCTCTTTAGTATAGGAAAACCTGACTTTGTCGAAATCAAGGGAGTCACATATTGCGGCTCGTCTGCGGCATCAAAATTGACTATGGAAAATGTCCCCTGGCATACTGATGTGAAAGCTTTCTCAGAGGCATTGGCTCTGAAAAGCCAAGGGGAGTATGAAGTTGCCTGTGAGCATGCTCACTCATGTTGTGTCCTCTTGGGGAAAACTGAGAAATTCAAGATTGATGGCCAATGGTACACGTGGATAGACTATGAGAAATTTCATGACCTGGTGGCTTCTGGGAGAAGCTTTAACAGCAGAGATTACATGGCTGCCACGCCATCCTGGGCTATCTATGGAGCAGAGGAAAGTGGATTTGATCCTGGACAATTGAGATATAGGAAAGAGCGACATCATAAATCAAGCCGGTGA 1929 0.452 MPLSSVPARLTLLALFSATTFYCLYKSRRLRHLKLPVYHKRTLPNTRGKILFVSQTGTSKSLAQRLHQLLAANALAFDLVDPKDYEPEDIPKETLVLIVASTWEDGKPPPSAKFFATWLAESAKDFRVGSLLLSRCKFSIFGVGSRDYGATFNAVARDLAEQMRALGATEMLPVWEGDVDTGDIDGVFDLWCAKVVSFLKGAVLENGGVSESNVGEKCNAQSLEDYEEDSEEENGMESEIVDLEDIAGKAPTRKSAPRGETNGKLDGKREMVTPVIRANLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNSAIDLHKNMIKQMKGVPGVTLERLSEGLSPRHCALSLVGEPIMYPEINALVDELHKRQISTFLVTNAQFPEKIKLLKPITQLYVSVDAATKDALKAIDRPLFGDFWERFIDSLTALKEKEQRTVYRLTLVKGWNTDEVDAYSKLFSIGKPDFVEIKGVTYCGSSAASKLTMENVPWHTDVKAFSEALALKSQGEYEVACEHAHSCCVLLGKTEKFKIDGQWYTWIDYEKFHDLVASGRSFNSRDYMAATPSWAIYGAEESGFDPGQLRYRKERHHKSSR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1943 642 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 42 640 IPR034556 GO:0008033|GO:0051539
Lele27g1943 642 ProSiteProfiles Radical SAM core domain profile. 316 559 IPR007197 GO:0003824|GO:0051536
Lele27g1943 642 MobiDBLite consensus disorder prediction 223 266 - -
Lele27g1943 642 Gene3D - 26 206 IPR029039 -
Lele27g1943 642 CDD Radical_SAM 328 504 - -
Lele27g1943 642 MobiDBLite consensus disorder prediction 225 240 - -
Lele27g1943 642 SFLD tRNA wybutosine-synthesizing 268 578 IPR034556 GO:0008033|GO:0051539
Lele27g1943 642 PRINTS Flavodoxin signature 97 108 IPR001094 GO:0010181
Lele27g1943 642 PRINTS Flavodoxin signature 135 145 IPR001094 GO:0010181
Lele27g1943 642 PRINTS Flavodoxin signature 160 179 IPR001094 GO:0010181
Lele27g1943 642 PRINTS Flavodoxin signature 49 62 IPR001094 GO:0010181
Lele27g1943 642 Gene3D Aldolase class I 259 586 IPR013785 -
Lele27g1943 642 SFLD tRNA wybutosine-synthesizing 268 578 - -
Lele27g1943 642 ProSiteProfiles Flavodoxin-like domain profile. 48 196 IPR008254 GO:0010181
Lele27g1943 642 Pfam Radical SAM superfamily 328 506 IPR007197 GO:0003824|GO:0051536
Lele27g1943 642 Pfam Flavodoxin 50 188 IPR008254 GO:0010181
Lele27g1943 642 SUPERFAMILY Flavoproteins 47 199 IPR029039 -
Lele27g1943 642 Pfam Wyosine base formation 511 572 IPR013917 -
Lele27g1943 642 SUPERFAMILY Radical SAM enzymes 329 509 - -
Lele27g1943 642 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 259 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1943 Lele-ChrLele27 23847877 23852019 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0141 25 871988 876843 Lele27g1943 27 23847877 23852019 hybridization
Lele26g0156 26 880267 891139 Lele27g1943 27 23847877 23852019 hybridization