Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1917 ATGGTAAGGCCACGTTTGATCTCACTAAGCTTGCCACGCTGTTATTCAAAGGGATTCGGAGATGTTGCAATACATAATTTGGCAAAAGAGATTGAAGAAGGATCAGACCTCCCTTTCTTCTCCAATGCTTCTCATTGCGGTCTGGTCTCTCTTGTATGGTTCGCAACATCAAATTCCTTTGCCCTCATAAGTCATAACAGGTCTGCCCTTGAGCTTGCAAGCACCACAACGGCAGACTTGCTTCAACACTAGCATCTGAAGGTTTGGACCCAACAGATGGCAAGCAGGTTTGGGGAATCAACGAGCAGATCACCTCCAAGCCCTTCCTACTCCAGCAACAATAGTAGCAACGATGCAGGCAATTTTGAATGCAACATATGCTTTGACTTAGCACAAGACCCTATCATTACTTTATGTGGCCATCTTTTCTGTTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCAGTTTGTAAGGCCATCATTGAGGAGGAGAAATTGGTCCCCTTATATGGGAGGGGTAAGTCCTCATCTGACCCAAGGTCGAGGTCTGTTCCTGGTATGAACATACCACATCGTCCATCAGGTCAGCGACCTGAAACTGCCCCGCCACCTGAATCAAACCACTTTCCTCCTCAACATGGGTTTGGATTCATGGGAGGGTTGGGAGGCTTTGCTCCAGCTGCAACAACAAGATTTGGGAATTTTACATTCTCCACAGGATTTGGTGGTTTTATTCCATCGTTGTTTAACTTTCAACTGCATGGATTTCATGACGGAGCTATGTATGGTAGTCCAACTGGTTTTCACTACGGATTTCCTAATTCATTTCATGGTGGCCACCACCCTCATGGATATTATCCTCGTCATACAGGTCAAGGGCAACAGGATTATCTTCTAAAGAGGCTTATTATGCTTGTTGTATTTTGTGTTGTTCTTGCTTTTATTTGGCAATAG 975 0.4492 MVRPRLISLSLPRCYSKGFGDVAIHNLAKEIEEGSDLPFFSNASHCGLVSLVWFATSNSFALISHNRSALELASTTTADLLQHXHLKVWTQQMASRFGESTSRSPPSPSYSSNNSSNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAIIEEEKLVPLYGRGKSSSDPRSRSVPGMNIPHRPSGQRPETAPPPESNHFPPQHGFGFMGGLGGFAPAATTRFGNFTFSTGFGGFIPSLFNFQLHGFHDGAMYGSPTGFHYGFPNSFHGGHHPHGYYPRHTGQGQQDYLLKRLIMLVVFCVVLAFIWQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1917 324 SMART ring_2 124 164 IPR001841 -
Lele27g1917 324 MobiDBLite consensus disorder prediction 178 216 - -
Lele27g1917 324 SUPERFAMILY RING/U-box 121 177 - -
Lele27g1917 324 ProSitePatterns Zinc finger RING-type signature. 139 148 IPR017907 -
Lele27g1917 324 Pfam Zinc finger, C3HC4 type (RING finger) 124 164 IPR018957 GO:0046872
Lele27g1917 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 178 IPR013083 -
Lele27g1917 324 CDD RING-HC_AtRMA_like 122 166 - -
Lele27g1917 324 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 108 178 - -
Lele27g1917 324 ProSiteProfiles Zinc finger RING-type profile. 124 165 IPR001841 -
Lele27g1917 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 104 319 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1917 Lele-ChrLele27 23717150 23720291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1917 122 307 C3H Transcription Factor Family AT1G19310 66.138 8.74e-85 253