Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1915 ATGGGTTGGCTTAGCAAAATTTTTAAAGGCTCTGACCATAAAATTTCGGAAGGGCGATATAATGCAAATTATAGGGAGGATACAGATTATTACTTACCATCAACTTCGGGGGATGTCTGGTCAGAGAATGAGAATGAAGATATAGATCGCGCTATTGCACTATCTCTTGTAGAGGAAAATAAGCGAAGAAAGAACGCAAATGACCGCAACTCACAATTAGAAGAAGATGAACAACTCGCGAGAGCGCTGCAAGAAAGTCTAAATGTTGAGTCTCCTCCTAGATATGGAAATGGAAATGGAAATGGAAATATTTATCAACCGCCAATGCCTGTGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGTTGTAATTCTGAGATTGGTTATGGACGATATCTAAATTGCTTGAGTGCATTCTGGCATCCTGAATGCTTCTGTTGCCGTGCTTGCAACCTCCCAATCTCTGATTATGAGTTTTCCACGTCTGGGAATTACCCTTATCATAAATCATGCTACAAAGAAAACTACCATCCAAAATGTGATGTCTGCAAGCACTTCATTCCAACAAATCCTGCTGGTCTTATTGAATATAGAGCACATCCTTTCTGGATCCAAAAATATTGCCCTTCTCACGAACATGATGGTACTCCACGTTGTTGCAGCTGTGAGCGTATGGAGCCACGAGAGACAGGATACATTGCTCTTAATGATGGTCGAAAGCTATGCCTGGAATGTCTGGATTCTGCTATCATGGATACTAGCGAGTGCCAACCCCTTTACTCAGACATACAAAAATTTTATGAAGGTCTTCATATGAGACTTGAGCAGCAAGTTCCATTGCTCTTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGGGAGAGGAATGGCCACTATCACATGCCTGAAACCAGGGGACTCTGCCTTTCTGAAGAACAGACTATCAGCACTGTCTCCAGGCGACCTAGGTTTGGAACAGGCAATAGGGCAGTAGACATGAGAACACAACCCTACAAACTGACTCGACGTTGTGATGTGACGGCAATTCTCATTTTGTATGGCCTTCCCAGGTTGCTTACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTGCGACTTAAAGGTTATCGGACTCTCAGACAAGATGTTGAAGAAGGCATATGTCAGGTTGTGGCGCATATGTGGTTGGAGTCTGAGCTTTCATCTGCATCATCCTCATCTTCATCCTATGCATCCAGGAAAGCCAAAAGACCTCAATTTGAGAGGAAGCTTGGGGAATTTTTCAAGCACCAGATCGAATCAGACATTTCCCCTGTTTATGGCGATGGATTCAGGGCAGGCCAACTGGCAGCTCGTAAGTATGGTCTCGAAAACACCCTTCACCATATTTGGATGACTGGGAATTTCCCCCCTTAA 1425 0.44 MGWLSKIFKGSDHKISEGRYNANYREDTDYYLPSTSGDVWSENENEDIDRAIALSLVEENKRRKNANDRNSQLEEDEQLARALQESLNVESPPRYGNGNGNGNIYQPPMPVYFPMGSRICAGCNSEIGYGRYLNCLSAFWHPECFCCRACNLPISDYEFSTSGNYPYHKSCYKENYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMEPRETGYIALNDGRKLCLECLDSAIMDTSECQPLYSDIQKFYEGLHMRLEQQVPLLLVERQALNEAREGERNGHYHMPETRGLCLSEEQTISTVSRRPRFGTGNRAVDMRTQPYKLTRRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLRQDVEEGICQVVAHMWLESELSSASSSSSSYASRKAKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQLAARKYGLENTLHHIWMTGNFPP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1915 474 ProSitePatterns LIM zinc-binding domain signature. 120 154 IPR001781 -
Lele27g1915 474 PANTHER PROTEIN DA1-RELATED 2 3 473 IPR045218 -
Lele27g1915 474 SMART uim 74 93 IPR003903 -
Lele27g1915 474 SMART uim 43 62 IPR003903 -
Lele27g1915 474 ProSiteProfiles LIM domain profile. 118 178 IPR001781 -
Lele27g1915 474 FunFam Protein DA1-related 1 114 173 - -
Lele27g1915 474 Pfam Protein DA1 269 468 IPR022087 -
Lele27g1915 474 Gene3D Cysteine Rich Protein 115 193 - -
Lele27g1915 474 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 74 93 IPR003903 -
Lele27g1915 474 CDD LIM_DA1 120 172 - -
Lele27g1915 474 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 112 145 - -
Lele27g1915 474 Pfam LIM domain 120 174 IPR001781 -
Lele27g1915 474 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
Lele27g1915 474 SMART lim_4 119 171 IPR001781 -
Lele27g1915 474 Coils Coil 56 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1915 Lele-ChrLele27 23707655 23712137 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele27g1915 DA1-like 7.8e-96 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0168 25 1018308 1022706 Lele27g1915 27 23707655 23712137 hybridization