Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1903 ATGTTCACTACATCGCATCCGGTAATTCGAAGCTTGGCAGGTTTGCCAGACCTGTCCTTAAACATAAGCCCACCATGTATTTCAGAATGGGAAGCCAAAGAGGTTACGGGCAAAACACTTTACAACAATATATGCTCAACCTCTGATTCTGGTAGCAGTACTGCTGGAAGTGACTTAAGCCATGAGAATGGCTTTCTTCACCTTGGCCATCCTGAGCCCACGTTGAGCCTAGGCTTTGAAACCCAAGATTTGAATCCCCATCTTTTCCAGGGACTCTCAAGAAACTTTAACCATCACTTCCACAACCATCAACCCCACATTTATTCCCGAAGCTTTAAACGAAATGCAAGAGTCATTAACGATGCAAAAAGAAGCCTTAGAGCTCCTAGAATGAGATGGACCACAACTCTCCATGCCCAGTTTGTTCGTGCCGTTCAGCTCCTTGGCGGTCATGAAAGGGCTACTCCAAAGTCTGTATTGGAGTTAATGAATGTTAAGGATCTAACCTTAGCCCACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACGGACAAAGGGACAGGTCATGGGAAGACGGATATGGGTTTGAGCCAAAGGCCACCAGAGAACAATGTGGATGTGCATGGAGCTTCAGCCTGTGAGGGAGCCCGTTTATTACCACAATCGCTCCAGAAATCCCTCAGAGCATCGTGGCAATCGTCAGTTGAGACAAGTAAAAATGACAGTAGACAAAAACCCCACATTGATTTGGCTCATTCTCATGATCTCAAGGCAAAGGAAACAAAGGTGGATGGAGGTAATATAGGACTTTGGAATTGCTTGAAGGGGAGATTGGATTGTAGCAATTTGTCGCGTTCCGATATGATGCTGGACCTAGAATTCTCACTTGGAAGACCCAGTTGGCAAACAGACTCTTATGAAGAAAAAGTTAGCGAAGAGTGGATCATGGAGGATGAAAGAGATAAGATTTTGCTAGCAAACATATGCTTTCAGTCCAAGAATTTGAGGACATTGGCTTTGATGTCATTATCAGGGCAGTGTAGGATTCAATGA 1062 0.4463 MFTTSHPVIRSLAGLPDLSLNISPPCISEWEAKEVTGKTLYNNICSTSDSGSSTAGSDLSHENGFLHLGHPEPTLSLGFETQDLNPHLFQGLSRNFNHHFHNHQPHIYSRSFKRNARVINDAKRSLRAPRMRWTTTLHAQFVRAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTGHGKTDMGLSQRPPENNVDVHGASACEGARLLPQSLQKSLRASWQSSVETSKNDSRQKPHIDLAHSHDLKAKETKVDGGNIGLWNCLKGRLDCSNLSRSDMMLDLEFSLGRPSWQTDSYEEKVSEEWIMEDERDKILLANICFQSKNLRTLALMSLSGQCRIQ 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1903 353 MobiDBLite consensus disorder prediction 185 206 - -
Lele27g1903 353 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 307 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lele27g1903 353 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 129 182 IPR006447 GO:0003677
Lele27g1903 353 SUPERFAMILY Homeodomain-like 126 183 IPR009057 -
Lele27g1903 353 Pfam Myb-like DNA-binding domain 130 181 IPR001005 -
Lele27g1903 353 FunFam Myb family transcription factor 127 185 - -
Lele27g1903 353 Gene3D - 128 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1903 Lele-ChrLele27 23653294 23656083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1903 1 231 G2-like Transcription Factor Family AT5G42630 50.431 6.13e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele27g1903 Myb_DNA-binding 2.2e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1903 27 23653294 23656083 Lele02g0874 02 5309448 5311604 CCT
Lele27g1903 27 23653294 23656083 Lele03g0891 03 5172576 5174746 CCT
Lele27g1903 27 23653294 23656083 Lele04g0888 04 5469363 5471543 CCT
Lele25g0178 25 1074446 1076865 Lele27g1903 27 23653294 23656083 hybridization
Lele26g0189 26 1104981 1106861 Lele27g1903 27 23653294 23656083 hybridization