Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1896 ATGGCTGTCCGGGTTACTTTTAGCTATTCTGGCTATGTCGCCCGAAGCTTGGTTTGGTCCGCTGTTACTCAAGTCGCCTCTACCCCTTGCTTCCAGGAATGCAGGATCCGGTCTCGCATATTTTGTCCTGGCCAACAGATTCATGATGTTCATTCCTCCTCCCCTTGCGGCGTGCGTAGTTACCATTTCGATTACAGGCGGCCCGAATCCAATCGCTGCGTAGAGAATTCAGCATCTACGTATACGACTCTAGCAGCGGGAATTCTGGGTGATAATTCTAAAAACCCGTTCATCTCGGGTTTGATTTCGATGATGAATTCAACTGTTGGTTTATCTGATTCATGTGGTGTGGAAACGGTTGTTTGGGGTATTTCCCCGTGGAAAGCCACTTCAATTATACCCTTTTTACAGGGGTCGAAGTGGCTTCCTTGTAACCAGTCGATTCCCTTTATCACAAGCTGTGTGGTGGATAAAGGCGGAGCTCACGGCTTTGGCGGGGAAGATAACCAGGAGTCGGGGTACAGTTCCAAGGATATTGAGAAGACAAGCTGGCTTTCTCGCTTTTTACGACTCTGTTCAGAGGATGCGAAAGCTGTGTTTACTGCCGCTACTGTTAATATTCTCTTCCGATCTTTCTTGGCTGAACCGAGATCGATTCCCTCGTCCTCAATGTACCCAACTCTGAATGTAGGTGACCGAATTTTGGCGGAAAAGGTTTCCTTCTTCTTTAGAAGGCCTGATGTTTCAGATATAGTAATTTTCAAGGCGCCTCCTATTTTGCAGGAAATCGGTTATAATTCAGGTGATGTATTTATAAAAAGAATTGTGGCGAAGGCTGGGGACTATGTTGAGGTTCTTGATGGAAAGTTGCTGGTGAATGGTATTGCTCAGGAAGAAGAGTTCATTTTGGAGCCACTCGCTTATGAGATGGATCCGCTGGTTGTGCCTGAAGGTTATGTCTTTGTGATGGGAGACAATCGCAATAACAGTTTTGATTCGCATAACTGGGGTCCGCTACCTGTCAAGAACATTGTTGGTAGATCTATGTTTCGATACTGGCCTCCATCCGAAGTATCAGAGACTCGCAAACTGACTCCTGCGAATAATTGTGTGGTAATTTCTTGA 1125 0.4604 MAVRVTFSYSGYVARSLVWSAVTQVASTPCFQECRIRSRIFCPGQQIHDVHSSSPCGVRSYHFDYRRPESNRCVENSASTYTTLAAGILGDNSKNPFISGLISMMNSTVGLSDSCGVETVVWGISPWKATSIIPFLQGSKWLPCNQSIPFITSCVVDKGGAHGFGGEDNQESGYSSKDIEKTSWLSRFLRLCSEDAKAVFTAATVNILFRSFLAEPRSIPSSSMYPTLNVGDRILAEKVSFFFRRPDVSDIVIFKAPPILQEIGYNSGDVFIKRIVAKAGDYVEVLDGKLLVNGIAQEEEFILEPLAYEMDPLVVPEGYVFVMGDNRNNSFDSHNWGPLPVKNIVGRSMFRYWPPSEVSETRKLTPANNCVVIS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1896 374 ProSitePatterns Signal peptidases I serine active site. 221 228 IPR019756 GO:0004252|GO:0016020
Lele27g1896 374 PRINTS Bacterial leader peptidase 1 (S26A) family signature 271 283 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele27g1896 374 PRINTS Bacterial leader peptidase 1 (S26A) family signature 315 334 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele27g1896 374 PRINTS Bacterial leader peptidase 1 (S26A) family signature 212 228 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele27g1896 374 CDD S26_SPase_I 215 347 IPR019533 GO:0004252|GO:0006465
Lele27g1896 374 FunFam Peptidase/ serine-type peptidase 221 352 - -
Lele27g1896 374 Pfam Signal peptidase, peptidase S26 196 353 IPR019533 GO:0004252|GO:0006465
Lele27g1896 374 Gene3D Umud Fragment, subunit A 209 366 - -
Lele27g1896 374 PANTHER SIGNAL PEPTIDASE I 181 360 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele27g1896 374 SUPERFAMILY LexA/Signal peptidase 210 358 IPR036286 -
Lele27g1896 374 TIGRFAM sigpep_I_bact: signal peptidase I 198 354 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele27g1896 374 ProSitePatterns Signal peptidases I signature 3. 320 333 IPR019758 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1896 Lele-ChrLele27 23615478 23617925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1896 224 354 MADS-box Gene Family AT1G29960 33.835 1.51e-14 68.2