Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1892 ATGAAGACTCCCACCACTCACCCCGTTTCCCAACCTCCTCAAATGCCTTTGTTTCGCAAATCATCATCTTCCCCCTCTCATACCCCCTCCACGCCTTCATCTATTTCTCCTCCTGCCCTCAAACAAACTGACGTCGATGCCGCTAGTCCCGTTCACAGCTGGGAGCAATCAACTCCCCGCCGCCGCCGCCTTACTCGAGCCAGGAAGCTTCGCTACCTCACCGACCATGATGTTGGCTTGCACCTCACTGACGATTCTTCGCTCCCGGCTTCCCCTCGGTCCTCTCGCAAGTCTCGCTCATCGGGTGGTTCCGAACACTGGTCCTCCTCCGCTGTGCCTCAACCCCTGCCACTTCCCGAATCACCGTTGACTCGCCGGCCGGAGTCAACCGGTCCTAATTCCCGACAGTTCCAGCTCGGATCTCCTTCCGTAGACCATTCGGGATTTGCTTTCGGGAGGAAGACGGTGGATCACGATGCATTCATAAACATGAAGTCTTGGAGCCGTATGAATAGATCTTGTGATCCAACCTCTGCGAACGCGAAATTTAATTTGAGAGTAAACATCCCAGTTGCAAGTTTCTGGACAGGTCAAAATTCATGTAAAGATCGAGCAAGCTCTCATGATATTGACTCTGAAAGTATTTATGACTCAAGATTGCGTGTGGCCACAAAGAGTGCCCCAACAAGTGTTTCTTCCAGTCCTGTTACCAGTCCGCGTAGATCAAGCAATGTAGATTTCACTGATCATTTCATTAGTACTCAAGAATTTCATGACAACCCTGTTGGCCATCCTTTGAAAGTGTCACCACACCTGAATGTTCAAAGTCCAGATCGTTCTTCTCTCCGTAGCCCAGGGCGCCATAGTCCTTTCCTCAATCTCAAAATCCAAGATGGATCTCAGCATAGATTTCATTCCAGGGCATGGCCAGAAAATAACAATGCAGATGCACATCCTTTGCCTCTCCCTCTTCCTCCTGGAGCTTCACCACCAGCACAATCATCTGTGCAGTGTCAATCAAGTGCCATGAGTCACTCATTTGAAAGTCAATTTTCAGTGAAAGGTCAATGGCAGAAAGGAAAACTTATTGGACGGGGCACTTTTGGAAGCGTTTATCATGCAACAAACCTAGAGACCGGTGCTTCATGTGCATTGAAGGAGGTGGATATCATTCGAGATGACCCTAACTCTGCGAACTGTATAAAGCAACTAGAGCAGGAAATCAAGATTCTTCGTCAACTACACCATCCAAATATCGTGCAGTATTATGGCAGTGAAATAGTTTGTGATCACTTGTGCATATATATTGAGTATGTTCATCCAGGGTCAATCGATAAATTTGTGCGGGCAAATGGTGAAGCAATGACAGAGTCTGTAGTTCGCAATTTTACACGACATATTCTCTCAGGGTTGGCTTACCTGCATAGTACCAAAACTATCCACAGGGACATCAAAGGAGCAAACTTACTTGTTGATGCATCAGGCACTGTCAAGCTTGCTGATTTTGGAATGTCAAAAGTTCTAACAGGGAAATCGTTTGCCCTTTCTTTAAAGGGCAGCCCATACTGGATGGCTCCTGAGGTCATGAAGGCTGCCATGATGAAAGATGACAATCCTGACCTTGTCTATGCTGTCGATATCTGGAGCTTAGGTTGCACTATCATAGAGATGCTGACAGGAAAACCTCCCTGGAGTGACTTTGAAGGGCCTCAGGCCATGTTCAAGTTGCTGTACAATTCGCCACCGATACCAGAAACATTATCTTCAGCAGGAAAGGATTTTCTTCAGAGATGTTTTGAAAGGGATCCTGCAAATCGACCATCAGCAGCAAGGCTTCTTGAGCACGCCTTTGTACAAAATTTGCTTGATCAAGATGCTTTAGCTCGCCCACATTCATATCCTAGAGAAGACCCTGAAGATAATTCACGTAGTCCCAAAGACACTACTACACAGAACCGTGATGTAATTCGAGCCTCCATGGGCGCCCGGTTCATCAACAAAATCCAGAAATTGATCGGTGATTCTTCCCAACGATATAATGCTGAGGATTCTAAATATTCTACATCTCATTACCCTCCTTACTCTCTGCCAGAAGTTAAAATTCGTCAGTCGTCCTTGAAACCAGCTGCCCTCAATTACGTTTCTGCTTCAAAATCCAGCAACATGTCCCTCGCTGTAATGAGATGCGTCACGCACCTTTGA 2202 0.4673 MKTPTTHPVSQPPQMPLFRKSSSSPSHTPSTPSSISPPALKQTDVDAASPVHSWEQSTPRRRRLTRARKLRYLTDHDVGLHLTDDSSLPASPRSSRKSRSSGGSEHWSSSAVPQPLPLPESPLTRRPESTGPNSRQFQLGSPSVDHSGFAFGRKTVDHDAFINMKSWSRMNRSCDPTSANAKFNLRVNIPVASFWTGQNSCKDRASSHDIDSESIYDSRLRVATKSAPTSVSSSPVTSPRRSSNVDFTDHFISTQEFHDNPVGHPLKVSPHLNVQSPDRSSLRSPGRHSPFLNLKIQDGSQHRFHSRAWPENNNADAHPLPLPLPPGASPPAQSSVQCQSSAMSHSFESQFSVKGQWQKGKLIGRGTFGSVYHATNLETGASCALKEVDIIRDDPNSANCIKQLEQEIKILRQLHHPNIVQYYGSEIVCDHLCIYIEYVHPGSIDKFVRANGEAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDASGTVKLADFGMSKVLTGKSFALSLKGSPYWMAPEVMKAAMMKDDNPDLVYAVDIWSLGCTIIEMLTGKPPWSDFEGPQAMFKLLYNSPPIPETLSSAGKDFLQRCFERDPANRPSAARLLEHAFVQNLLDQDALARPHSYPREDPEDNSRSPKDTTTQNRDVIRASMGARFINKIQKLIGDSSQRYNAEDSKYSTSHYPPYSLPEVKIRQSSLKPAALNYVSASKSSNMSLAVMRCVTHL 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1892 733 MobiDBLite consensus disorder prediction 630 653 - -
Lele27g1892 733 MobiDBLite consensus disorder prediction 273 287 - -
Lele27g1892 733 Pfam Protein kinase domain 358 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1892 733 ProSitePatterns Protein kinases ATP-binding region signature. 363 386 IPR017441 GO:0005524
Lele27g1892 733 MobiDBLite consensus disorder prediction 126 143 - -
Lele27g1892 733 MobiDBLite consensus disorder prediction 1 66 - -
Lele27g1892 733 Gene3D Transferase(Phosphotransferase) domain 1 354 657 - -
Lele27g1892 733 SMART serkin_6 357 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1892 733 ProSiteProfiles Protein kinase domain profile. 357 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele27g1892 733 FunFam Predicted protein 353 638 - -
Lele27g1892 733 MobiDBLite consensus disorder prediction 223 335 - -
Lele27g1892 733 MobiDBLite consensus disorder prediction 223 255 - -
Lele27g1892 733 MobiDBLite consensus disorder prediction 80 144 - -
Lele27g1892 733 SUPERFAMILY Protein kinase-like (PK-like) 336 650 IPR011009 -
Lele27g1892 733 MobiDBLite consensus disorder prediction 15 40 - -
Lele27g1892 733 MobiDBLite consensus disorder prediction 630 647 - -
Lele27g1892 733 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 28 640 - -
Lele27g1892 733 MobiDBLite consensus disorder prediction 87 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1892 Lele-ChrLele27 23590018 23594958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1892 61 622 MAP Kinase Kinase Kinase AT5G66850 46.633 1.54e-146 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele27g1892 Pkinase 5.6e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0945 01 5453411 5455573 Lele27g1892 27 23590018 23594958 CCT
Lele02g0947 02 5740719 5742932 Lele27g1892 27 23590018 23594958 CCT
Lele03g0942 03 5470399 5472958 Lele27g1892 27 23590018 23594958 CCT
Lele04g0939 04 5783040 5785213 Lele27g1892 27 23590018 23594958 CCT
Lele25g0191 25 1136985 1141998 Lele27g1892 27 23590018 23594958 hybridization
Lele26g0199 26 1174590 1179257 Lele27g1892 27 23590018 23594958 hybridization