Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1871 ATGTCCAGGACACTGGTGCAGCCGATAGGGCAGAAGAGGTTGACGAACGTGGCGGTGGTGCGCCTGAAGAAGCATGGAAATTGCTTCGAGATCGCCTGCTATCCAAACACGGTCCTTTCTTGGCGTTCTGGCGTGGAGAAAGATCTGGATGAAGTATTGCAGTCGCATACTGTTTATTCAAATGTTTCAAAAGGAGTTCTAGCGAAGTCAAAGGATTTGATTGCTGCCTTTGGAACTGATGATCAGTCAAAGATATGTTTGGAGATTTTAAAGAAAGGAGAGCTTCAGGTTGCTGGGAAAGAGAGGGAATCTATTCTTTCAAATCAGTTCAGGGATATTGCAACCATTGTTATGCAAAAGACATACAATCCTGAAACTCAACGTCCTTACACAATCAATATGATTGAAAGACTGATGCGCGAAATACATTTTGCTGTTGACTCAAACAGCAGTTCAAAGAAGCAGGCTCTGGAAGTTATTCAAGAGCTTCAAAAGCACTTTCCAATTAAACGGTGTCCACTAAGAATACGAGTTGCTGCTCCAGAGGAGGAAGTTCATTTGCTGCTAGATAAGCTGAATGCTTGGGAGGCCAGCATCATTTCCAAAGAAGCATCTGCTAGTCAGTTGTCTGTCGTATTTGAATTGGAACCTAGTATATATAAAGAGTGCCATGACTTTGTTATGAACAACATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTATATGTGGATGGTGATACCCATGTGGAACAATACAATGATCATGAGGATCTGCCTGCTCTGTCGCCGGAAGACGCTCGTGAGTCTGTGCTTGAACTGAATGAAAAACTTCAGAAGCAGACAATTTCTACCAAGAGCGGACCTAGTGAGGGGCAACAAAAGCAAAACAAGTGTAACACATGTAATGCCTCTTTTGAAAATCCCATGCTGTATAGGGAACACCACAAGAGCGAGTGGCACAAGCATAATATGAAGCGCAAGACAAGGCAACTCCTCCCCTTAGTGAGGAAGACTGCATGGCGGACATGGATCTGGGTGACTCGAAATCTGATTTGA 1059 0.4372 MSRTLVQPIGQKRLTNVAVVRLKKHGNCFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDQSKICLEILKKGELQVAGKERESILSNQFRDIATIVMQKTYNPETQRPYTINMIERLMREIHFAVDSNSSSKKQALEVIQELQKHFPIKRCPLRIRVAAPEEEVHLLLDKLNAWEASIISKEASASQLSVVFELEPSIYKECHDFVMNNMHGRFEVLAHSLYVDGDTHVEQYNDHEDLPALSPEDARESVLELNEKLQKQTISTKSGPSEGQQKQNKCNTCNASFENPMLYREHHKSEWHKHNMKRKTRQLLPLVRKTAWRTWIWVTRNLI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1871 352 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Lele27g1871 352 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Lele27g1871 352 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Lele27g1871 352 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 227 IPR002140 GO:0042256
Lele27g1871 352 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Lele27g1871 352 Gene3D - 174 251 - -
Lele27g1871 352 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Lele27g1871 352 FunFam SBDS, ribosome maturation factor 3 96 - -
Lele27g1871 352 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Lele27g1871 352 SUPERFAMILY beta-beta-alpha zinc fingers 286 333 IPR036236 -
Lele27g1871 352 Gene3D - 1 96 IPR036786 -
Lele27g1871 352 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 241 IPR039100 -
Lele27g1871 352 FunFam SBDS, ribosome maturation factor 100 172 - -
Lele27g1871 352 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Lele27g1871 352 Gene3D - 100 172 IPR037188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1871 Lele-ChrLele27 23462357 23464854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1871 46 335 C2H2 Transcription Factor Family AT1G43860 59.076 4.38e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele27g1871 SBDS_C 1.3e-28 CL0437