Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1852 ATGGATCACCCCTCTCACTTCCATCACCAGCACCAGCAGCAGGCAAGGTACGCTCCTCTTCCCCCTCATCACCCGCGCCATTCACAGTTCCCCGAAGATCCCCGTTTGCGCCCTCACCACCTTCCTCCGCCGCCTCCTCCGGCGGCACCAACTCTTCCACCCCCTCCCCCTCCTCCGTCTGTTTCCTATCGAAACGTCCGCACCCTTCCTCTAACGCATCCTCACCCCTACATTTCTCCTCATCAATCCCAGTTTTCTTTCAACGCCCCGAATTATGCCCACCGTCCGGTTGAAGAAGAACGCCCTGTATCTGCTAGCCACCCTCACGATTTCACACACTCGCAGAGGGTTTCAAATAGGATGATTATTGATAATGATCGGCCTCGCCACGGTCTCGCTGATTTCGACTATCGCAATACCGTTAACCGCCCCGGTGGTTGGAACCAACCGAGGGTCTTGTCAGATAATCGGCCGTCGAGGCCTTACCCTCCTGCTGACTTTGACCGGGAATTGCGTCTGCAGCAGCCATTGAATCACAAAATAGCGGCGCCATATCCGCCAATTGATAAAGTTAGGTATAATTCAGAGGGCAACTCGAGGGTAAGAGTTGATCACATTGATGGGTATGAAGTCAAGACAAGGGAAGAGTTTGGATGGGGTAGAGGTGATGAGAAATATCATCGCCGCAGGGATTTTGGATCAAATCTCAAAGCATGTTCTGGAGACTTCGGAATCATGTCTAGTCAGAGTACATCATCAAGGGATCTTGATTCGAAGAATGGGGATTATGTGCATTACGGCATGGAACGGGACAGCGAAATATCTAGGGGTACTAGAAGAGATGGACTTGGTGATAACAAGAGGTGGGTAAATGATAGGAAGGGCCTCAGAGACCCACACAACTCATCTTTTGAATTGGGAAACAACGATAACGGTGGTGATGGTATTCGGGTAACGTCCGGGAAGTATTATGGTTCGGATGTGGGTAGATATAATAATAGAGTGAACAGGGAATCTGGTCTTGAATTTAGTCGTGCTCCAAGGAAACAAATTCAGAAAAAGAGTGCGCTTCTTAGAATTCAAATGGCAAAACAAAATCATAAGAACCGTGAGATTGAACAGTTACAATATACCAGTTATGTCGATGACTCAAACTCTAATTCCTTTAGAGGCAAAGATCAATTTGAATATTCAGGTTCTGGGGTCAAGGCAGAAGAGAGAGAGAGAAGTCCTGTTGAGCTTGATATTTCTTTTAAATCAAATTCTCTGGTGGCTAAGGCCATTGTGGCACCTTCAAGTTCTGGAGTTTCTGATGCAGATATCACATCTGTTTCTGATACAGATTTTGCTCCTGCAGAAAAGGGAAAAAATGGTTTGGCCTCTGATTGTGATTCTCCTGATTTAAAACCTTCCAAACCATCTATGGCTGCTGTAAACTCAGGTGGCTCACCATGCAAGGTGAATTGCATCGCTAGTTCTAGCAAGGAATTTAACTTACAGAAGAAGGTCTCTGATAGTTGTTCTCAGCTTTGTGCCCGTGTAACTGCTAATTGTCATGTAAAAAATGAGGGGGCTCAAACCCCCAAGGGAATTGTTTCTCATGAAATTACCAACTCTTGTTCTGTTAAACCATCTCCAAGGGTAGCCAAGAAGAAGAAAATTGTAAAGAAAGTGGTGAAGAAAGTTGTTTTGAATCCTAAAATAAATGTCTCAAGTTCCATGTCCTCAAATATGCCTGATGGAACTGTGAAAGCTGATAGTGTTAGTCCTTCATCTACCTCTGGATCTGACAAAACTGGAACTTCTTTAATGAAGAAAATCACTGCTGTTGACAAGGTGTCCTTGCCAGATAATTTGTTGTCTTATCCAGAGGAAGGACATCTGCTGCCCGATAATAGAAAGGAAGATCTACCTCTGTTTAGTACAGGGCCACATACCAGTTCACAAAAGCATGAGGCTGATGATAACGCTGATACAGGGCAAGTAGATAGAATTGAAAGAAGTAAAAACGTTTCTAATTCTTCATTGGGTGCTTTTAGCACTAAAGATGAAAAGAATGATCCTGATTGTCCGAATGCAGATGATTTTGCCCATGGATTGCATAGTAATCCAAATACTGACAAGGCTTCTAAGGCTAAGTCACCAAATGGAATTACTTTTTCTGATATTAGTAACAGGGATGATGTTAATATGCAACTTTGTCAGAGTGAGGTGTCCCTATCACCTCAGCAGTATTCAAATGTACAATATTTAGATAATCAGTTTCATGTAGAAGAGGATAAGAACAGCAGACTGTCAACATCGGCTGAGAGTGTAATTAACACAGATGTTATAAACACATATAATTCTGCTAATTTTAGTCCGGCTTGCTTGAGTTTTAATGATCTTGCTAGTAATGCACAAAAGAACATTACAGTTTCTGACTTTGGAAATGATGGCAAGTTAGATTGCAAAACTAAAGCCCTTGAATTATCTGACAGTCTTATTTTGGAAGAAAACCCAGAGACTTGCTCCCCTGTACCAAGCGGTGGAATGGATAGTCTTTCAAGTTCTGCGGAAACTAGGATTTCAGATGGTCAAGAATGCCCAAAACATTCAAGAGTACCCATGCATGTTTCTGATAACAGCCCTACTAATTCAGAAGAGAATATCATGGTTCATCATAGTGTTATTGTCAAAGATTCTGGAAATGAGGCATCCCCTGTGGATGTCACTGCATCTCCTGAGAATTGTACCACAGAACAGTCTCCAAATGTTAATTTTTTGGTTAGATTTGCTGAAGGAGATACAAATATGTCTAAAAAAAGAAAAGTTGAGACACATTTAAATTTTTCAAGTTCAGATATCGGGGGCATATCTGCAGGTCCTATACAGACAGTTAGCCTTGCAAATGTGTATAAAACCTCAAGTCTGTTGAAGGATTCAAGTGTGTCAGAAGTTTTAAATCCATATGTTCAAAGCTCAGAGTTTTGCTTACAATCCGGCACAGGTGGGGTTACTGGTTTGCATGGGAAGAGGGATGTTTCTGAGACTGAAGTTTACTTTGGAAATAGTGTCAGTAACAGTGCAAATAGGGATTCACCATTGTCTAAAATAAATGAAGTCACTACTAGTCACATGAATGCCACTTTATTGCAAGCTGAACTTTGTGATGCAATTGTGGTTGCTACATCTTGTGCAGAAGTTCCTATTAGTGTTAGTGATAACAAGACACACCAGAAAGAGGTTGCATTTTCAAGCATGGTTGAACCTTCTGCTTCTCTATCCCTGCCTTATCCTGAGAGTAGTGCTAAATTGTACAACAATAGTTTGTTTGAAGGATCTGTTGAGTCTGTGGATGCAAATACAAATATTACGAAGTTTGAATTCTCCCAATTGCAGCACCCATCCATCAACTGTGATTCACTTGAGGATTTGACTATTCCAAATGATCAGTTTCCAGTGCTGGAAAACGAGCAGAAAGAAAATTCTCTTCCAGTTGTTCCTATAAACAACATTCAGAAGGACATTCTGGTTTCTGGAAATACTGAAAGAGAGAAGATTGATATACAGGATGTTGTAAAGTGTGAGTCCAGAGAATTTGAAGAAAGATCTCCGAGTGTTGATTGGGAATCCAGTAATCCTCAAACAAAGGATGATTTACCTCTTGAGCATCAATCTCTGTCCTGCCCAGCTGATACTGATGCTGTAACAACAAGTGACTGCAGTACAGTATCAGATATACCTTCTCCGGGGACCATGCCTGACATGCTTGATAGTAGGACTTCAAACTGTCAAGCAATCCAAAATGAAAGCATTCAAGTGGATGAAGATAATGCGGATAGCAGATCTAAGGTTGAACTGGATTGTGACTTACCTGCTTCTACATCATATTCACAGTATACTAAAAAGAATATAAAGTCAAGTTCTCCAGCCAGACGTGATAACTTGATCACAGGGAAGATGATGCCTCAAGCTTTGCAGGTTGATTCCAAAGTTATGACTCAAGGACTGAATCCATCTTGTTCAGAGTTAAATTTTGGCAAAAGTCACTCGGGTTCTGCCATTCCTAACACTTTCCAGAGTCGATCCTACTTAAATTTTCCCAAGTCAAAGACATCTGCATATTCAACCCTGGTTTCAAAACTTCGAACTTGGCATCGTACAGATAATAATTCTGGTTCTCTACCAGGAAATAAGCCTTTGGCAGGATCTGTGCCTCCCAAAAGGTCAATTTCAGAAAAGAAAGGGAACTTTCAAAGTACTTCTTACATTCGTAAAAGTAACAACAGTATTGTAAGGAAACATACTTCTGTTTCTGCTTCATCACAATCCACTGCTAATCAATCTTCTTCTTTGGGGTATGATGAATTTCATAAGAGAACTGGATCTGATATGGTGGAAATCTCAAATCACACAAATCTCTTGAAAACAGGATTGACACACGCTCCTCTGGAGAGGAAAAGAACACCTCCACTACCTGTTGACACTAAATTACCTGATCATATTGTAACAGCATGTGAGGAGAATAAATCTTCCTCATTAATAGAACCACTTTCCAATGCTTTCCGTGATACTGCATCTGAATCTAGAAACTTTACAGTGCCTTGTGATGCTCCAAACTCTGCTGATGATGCACTGAAGTTGGATGAAACTGGTGAAAGTCTAACTGTCCCATCAAACAATGTGGAAAGCCAAGTCGAAGCACATGATGAGAATGTGCCTTTGAATTCAAAGAGAATAGTCTATGTAAAGCGCAAATCAAATCAGTTGGTTGCAACTTCAAATTCTTGTGAACTTTCTGTTGCTACTGATGACAATGTCCAGGTGGCCTCTTCCGATGGGTACTACAAGAGGAGCAAAAATCAGCTAGTTAGGACTACTTTTGAAAGTCAAATCAACCAGACAGTCGCAATGCCCGCTGTAAACTCTGATGTGCACAGGGACCGTAAAGCTAGTTGCAACAGGAGGTTTGGTAAGAGGCGGTCTCTGAAGGTTGTTGGAAGTTCATGCAAACCTTTGAGAGCCTCATTGGTGTGGACTCTCTGTGGTGCAAGCTCATCGAAAAATGACAATGACTCTCTACATCATCAGAAGGTTCTGCCTCATTTGTTTCCATGGAAAAGAGCAACATATTTAAAGAGTTTCATTTCTAATCCTGCTTTGAGCTCCAATACCAATTCATTATCTGCTATCAGCAAGAAATTGGTTCTGTCGAGAAAGAGGGATACTGTTTATACTAGATCAACCCATGGATTTTCCCTTCGGAAATCCAAGGTGTTAGGCGTTGGTGGATATAGTCTAAAATGGTCAAAATCAATTGAGAAGTCATCAAAGAAAGCTAACGAGGAAGCCACTCTTGCAGTTGCTGCTGTAGAGAAGAGGGAACGGAAAGATGTTGCTTCTATCAGTTCTCGGGCAAAGAGAGAACGTATTTTTCGCATTGGGTCAGTTCGTTACAGAATGGACTCTTCCAGGAGGACACTTCTGAGGATTTCAGATGATGAATCCCTGCCCTCTGCTTCTCTCCGTTCAGGTTTGCATGTGAAAAGTTCATACATTCCCAGGAGATTAGTGATTGGAAATGATGAATATGTCCAAATTGGCAATGGCCATAAGCTTATCAGAGACCCAAAGAAGCGAACTCGTATATTGGCTAATGAAAAAGTTAGATGGAGTTTACATACAGCTAGACAACGGTTGGCTCGAAAGCAGAAGTATTGTCAATTCTTTACTAGATTCGGGAAATGTAACAAGGATGACAGGATGTGTCCCTATATTCATGATCCCTCAAAAATTGCTGTCTGTACTAAGTTTCTGAATGGTTTATGTTCCACTTCCAACTGCAAATTGACTCATAAGATTATTCCAGAGAGAATGCCCGATTGCTCTTATTTTTTGCAAGGTTTATGCACAAACAGAAATTGCCCCTATAGACATGTTAATGTGAACCCTAAGGCATCCATTTGTGAAGGATTTCTCCGGGGATATTGTGCCGATGGCAACGAGTGTCGGAAGAAGCACACCTATGTCTGCCCTACTTTTGAAGCAACAGGAATCTGTACCCAAGGGACCAAATGCAAACTTCATCACCCCCAAAAACAAGGCAAGGGAAAGAAAAGGAAGGGGTTGGTAGATCAGAGAAACTGTAAAAGGAGATACTTTGGTTCTTTACGGATTGGTGTTTCTGAACCTGGGACGACGGTTGTAGCTCCAAGGCAAGGGGAACAAAATAAGGATGAACTTGAAGGAGAACGTACTGACTATATCAATCTCGATGTCGACGATGAAGGCATTGCAGAACTTACGGGACAAGCAAGCGAGCAATCAACATTGTGTGATAGTGAACCTGTAGATATAGTATTAGATGATCAGGATGAACTCATTAAACCTGTTCTGATAATGAAAAAGGATATTGGGGCTCAGGCATCTCCTATCTGA 6420 0.4165 MDHPSHFHHQHQQQARYAPLPPHHPRHSQFPEDPRLRPHHLPPPPPPAAPTLPPPPPPPSVSYRNVRTLPLTHPHPYISPHQSQFSFNAPNYAHRPVEEERPVSASHPHDFTHSQRVSNRMIIDNDRPRHGLADFDYRNTVNRPGGWNQPRVLSDNRPSRPYPPADFDRELRLQQPLNHKIAAPYPPIDKVRYNSEGNSRVRVDHIDGYEVKTREEFGWGRGDEKYHRRRDFGSNLKACSGDFGIMSSQSTSSRDLDSKNGDYVHYGMERDSEISRGTRRDGLGDNKRWVNDRKGLRDPHNSSFELGNNDNGGDGIRVTSGKYYGSDVGRYNNRVNRESGLEFSRAPRKQIQKKSALLRIQMAKQNHKNREIEQLQYTSYVDDSNSNSFRGKDQFEYSGSGVKAEERERSPVELDISFKSNSLVAKAIVAPSSSGVSDADITSVSDTDFAPAEKGKNGLASDCDSPDLKPSKPSMAAVNSGGSPCKVNCIASSSKEFNLQKKVSDSCSQLCARVTANCHVKNEGAQTPKGIVSHEITNSCSVKPSPRVAKKKKIVKKVVKKVVLNPKINVSSSMSSNMPDGTVKADSVSPSSTSGSDKTGTSLMKKITAVDKVSLPDNLLSYPEEGHLLPDNRKEDLPLFSTGPHTSSQKHEADDNADTGQVDRIERSKNVSNSSLGAFSTKDEKNDPDCPNADDFAHGLHSNPNTDKASKAKSPNGITFSDISNRDDVNMQLCQSEVSLSPQQYSNVQYLDNQFHVEEDKNSRLSTSAESVINTDVINTYNSANFSPACLSFNDLASNAQKNITVSDFGNDGKLDCKTKALELSDSLILEENPETCSPVPSGGMDSLSSSAETRISDGQECPKHSRVPMHVSDNSPTNSEENIMVHHSVIVKDSGNEASPVDVTASPENCTTEQSPNVNFLVRFAEGDTNMSKKRKVETHLNFSSSDIGGISAGPIQTVSLANVYKTSSLLKDSSVSEVLNPYVQSSEFCLQSGTGGVTGLHGKRDVSETEVYFGNSVSNSANRDSPLSKINEVTTSHMNATLLQAELCDAIVVATSCAEVPISVSDNKTHQKEVAFSSMVEPSASLSLPYPESSAKLYNNSLFEGSVESVDANTNITKFEFSQLQHPSINCDSLEDLTIPNDQFPVLENEQKENSLPVVPINNIQKDILVSGNTEREKIDIQDVVKCESREFEERSPSVDWESSNPQTKDDLPLEHQSLSCPADTDAVTTSDCSTVSDIPSPGTMPDMLDSRTSNCQAIQNESIQVDEDNADSRSKVELDCDLPASTSYSQYTKKNIKSSSPARRDNLITGKMMPQALQVDSKVMTQGLNPSCSELNFGKSHSGSAIPNTFQSRSYLNFPKSKTSAYSTLVSKLRTWHRTDNNSGSLPGNKPLAGSVPPKRSISEKKGNFQSTSYIRKSNNSIVRKHTSVSASSQSTANQSSSLGYDEFHKRTGSDMVEISNHTNLLKTGLTHAPLERKRTPPLPVDTKLPDHIVTACEENKSSSLIEPLSNAFRDTASESRNFTVPCDAPNSADDALKLDETGESLTVPSNNVESQVEAHDENVPLNSKRIVYVKRKSNQLVATSNSCELSVATDDNVQVASSDGYYKRSKNQLVRTTFESQINQTVAMPAVNSDVHRDRKASCNRRFGKRRSLKVVGSSCKPLRASLVWTLCGASSSKNDNDSLHHQKVLPHLFPWKRATYLKSFISNPALSSNTNSLSAISKKLVLSRKRDTVYTRSTHGFSLRKSKVLGVGGYSLKWSKSIEKSSKKANEEATLAVAAVEKRERKDVASISSRAKRERIFRIGSVRYRMDSSRRTLLRISDDESLPSASLRSGLHVKSSYIPRRLVIGNDEYVQIGNGHKLIRDPKKRTRILANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDDRMCPYIHDPSKIAVCTKFLNGLCSTSNCKLTHKIIPERMPDCSYFLQGLCTNRNCPYRHVNVNPKASICEGFLRGYCADGNECRKKHTYVCPTFEATGICTQGTKCKLHHPQKQGKGKKRKGLVDQRNCKRRYFGSLRIGVSEPGTTVVAPRQGEQNKDELEGERTDYINLDVDDEGIAELTGQASEQSTLCDSEPVDIVLDDQDELIKPVLIMKKDIGAQASPI 2139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1852 2139 Gene3D - 1923 1976 - -
Lele27g1852 2139 FunFam Zinc finger CCCH domain-containing protein 7 1978 2038 - -
Lele27g1852 2139 ProSiteProfiles Zinc finger C3H1-type profile. 1895 1924 IPR000571 GO:0046872
Lele27g1852 2139 MobiDBLite consensus disorder prediction 666 681 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 1201 1216 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 448 477 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 1194 1253 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 840 857 - -
Lele27g1852 2139 FunFam zinc finger CCCH domain-containing protein 3 1925 1976 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 1407 1448 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 290 312 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 624 724 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 648 665 - -
Lele27g1852 2139 SMART c3hfinal6 1895 1923 IPR000571 GO:0046872
Lele27g1852 2139 SMART c3hfinal6 1977 2003 IPR000571 GO:0046872
Lele27g1852 2139 SMART c3hfinal6 1950 1975 IPR000571 GO:0046872
Lele27g1852 2139 SMART c3hfinal6 2004 2026 IPR000571 GO:0046872
Lele27g1852 2139 SMART c3hfinal6 1924 1948 IPR000571 GO:0046872
Lele27g1852 2139 MobiDBLite consensus disorder prediction 1224 1253 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 40 63 - -
Lele27g1852 2139 Gene3D - 1977 2036 - -
Lele27g1852 2139 ProSiteProfiles Zinc finger C3H1-type profile. 1977 2004 IPR000571 GO:0046872
Lele27g1852 2139 MobiDBLite consensus disorder prediction 833 880 - -
Lele27g1852 2139 PANTHER CCCH ZINGC FINGER 338 2131 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 1 66 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 1381 1448 - -
Lele27g1852 2139 MobiDBLite consensus disorder prediction 703 724 - -
Lele27g1852 2139 ProSiteProfiles Zinc finger C3H1-type profile. 1950 1976 IPR000571 GO:0046872
Lele27g1852 2139 MobiDBLite consensus disorder prediction 570 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1852 Lele-ChrLele27 23348970 23358360 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele27g1852 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0235 25 1374007 1383373 Lele27g1852 27 23348970 23358360 hybridization
Lele26g0245 26 1429019 1442771 Lele27g1852 27 23348970 23358360 hybridization