Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1842 ATGGAAGATGTAAGCAATCGGATAGCACCAGCACGTAATGTTGATGATGGCTTCTCCAGTAACAAGAAAGCCGGGTGGAGGGACTTTCTATCCTACGTAGGTCCTGGTTTTCTGGTCTCCATGGCTTACCTTGATCCTGGAAACTTGGAAACTGATATGCAAGCTGGAGCTAACCACAGATATGAGAGGGTGTCCTGTTATTGCCTTGTGCAGCTGCTATGGGTGATACTTATTGGGCTATTTTTTGCTCTCATTATTCAGTCATTGGCTGCAAATCTTGGCGTAACCACCGGGAAGCACCTTTCAGAATTATGTAAGTTGGAGTACCCATCACTAGTAAAGTACTGCTTATGGTTGCTGGCTGAGATTTCTGTCATAGCTGCAGATATAGCCGAAGTTGTTGGCACAGCCTTTGCGCTCAACATACTCTTCCACATCCCACTATGGGCAGGAGTTCTCTTGACTGGCTTCTCCACTCTTTTGCTTCTTGGTCTCCAGAGATTTGGCGTTAGGAAGCTGGAAGTGCTGATATCAGCTCTAGTATTTGTAATGGCGGGATGCTTCTTTGTGGAAATGAGCTATGTGAAACCACCAGCTTCTGATGTATTGAAAGGAATGTTTGTCCCCAGACTTGACGGTCATGGAGCCACTGCTGACGCCATTGCCCTTTTTGGAGCCCTCATCATGCCCCACAACCTCTTTCTCCACTCTGCTCTTGTGCTCTCTAGAAAAGTACCCAGCTCTGTCCGTGGCATCAATGATGCATGCAGATACTTTCTAATAGAAAGTGGGTTTGCTCTGTTTGTAGCATTTCTAATAAACGTAGCAGTGGTTTCAGTATCAGGCACAGTATGCTCAGCAAATAATCTTTCAGCTCAAGATACAGAAAGATGCGAGGATCTCTCCCTTGATTCTGCCTCCTTTCTTCTCAAGAATGTGTTAGGAAGGTCCAGTTCAACAGTTTATGCCATAGCACTTCTGGCCTCTGGACAAAGCTCCACGATCACTGGCACCTATGCAGGGCAGTACATCATGCAGGGATTCTTGGATTTGAGGATGAAAAAATGGATGCGAAATTTGATGACTAGGTGTGTTGCCATAGTACCTAGCCTTGCTGTTGCTGTTATGAGCGGATCTTCGGGTGCAAGCCGCCTTATTATCATTGCCTCGATCATTGTGATTTCATGGATCCTAGGCTTGGGAATCATCGGCATCAACGTGTACTACCTAAGCACCGGTTTTGTGGGTTGGTTAATTCATAGCAGTCTCCCAAAAGTGGCAAACATATTCATTGGGATCATAGTATTCCCTCTCATGGCCATTTATGTTGTTTCTGTTATATACCTCACCTTCAGAAAAGACACTGTCAAGACATTCATAGGGACTCAGAACGACTCTGTGGTGCCAACCCACATGGAAAAGGCTCTCGTTAATGCTAATGAGCAATTGGAACTGAGTCCAATTTCTTTTAGACAAGATTTAAGGGATATCCAACTTCCAGATTAA 1506 0.4502 MEDVSNRIAPARNVDDGFSSNKKAGWRDFLSYVGPGFLVSMAYLDPGNLETDMQAGANHRYERVSCYCLVQLLWVILIGLFFALIIQSLAANLGVTTGKHLSELCKLEYPSLVKYCLWLLAEISVIAADIAEVVGTAFALNILFHIPLWAGVLLTGFSTLLLLGLQRFGVRKLEVLISALVFVMAGCFFVEMSYVKPPASDVLKGMFVPRLDGHGATADAIALFGALIMPHNLFLHSALVLSRKVPSSVRGINDACRYFLIESGFALFVAFLINVAVVSVSGTVCSANNLSAQDTERCEDLSLDSASFLLKNVLGRSSSTVYAIALLASGQSSTITGTYAGQYIMQGFLDLRMKKWMRNLMTRCVAIVPSLAVAVMSGSSGASRLIIIASIIVISWILGLGIIGINVYYLSTGFVGWLIHSSLPKVANIFIGIIVFPLMAIYVVSVIYLTFRKDTVKTFIGTQNDSVVPTHMEKALVNANEQLELSPISFRQDLRDIQLPD 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1842 501 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 27 401 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele27g1842 501 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 21 393 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele27g1842 501 PRINTS Natural resistance-associated macrophage protein signature 117 143 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele27g1842 501 PRINTS Natural resistance-associated macrophage protein signature 170 191 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele27g1842 501 PRINTS Natural resistance-associated macrophage protein signature 145 164 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele27g1842 501 PRINTS Natural resistance-associated macrophage protein signature 358 375 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele27g1842 501 PRINTS Natural resistance-associated macrophage protein signature 330 349 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele27g1842 501 PRINTS Natural resistance-associated macrophage protein signature 220 243 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele27g1842 501 Hamap Divalent metal cation transporter MntH [mntH]. 15 414 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele27g1842 501 Pfam Natural resistance-associated macrophage protein 50 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1842 Lele-ChrLele27 23262304 23265037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1842 21 500 Inorganic Solute Cotransporters AT1G80830 54.492 0.0 553