Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1829 ATGAATTGTCCCAACGCAAGAGAACACAACCAAAAGGAAAAGGAAGAGAGACGGAGAGCGTGGCGTATAACGGAGAATTCCTTGACCTCGACAGTGAAGATGGAGGCGAAATCGGATGTTGAGGATAGTATTAAGCTGCAGAAGGAAGAAGATCTGCATAATTTCCATGTCTTAGCAGTCGATGATAGTCTTATCGATCGGAAACTCCTCGAGAAGCTCCTTCAGGTCTCTTCTTGCAAAGTGACGAGTGTGGACTCCGGCGACAAGGCTCTGAAATATCTTGGTCTTGTTGATGATCTTGATAATGCTTCTTCAACTTCTTCAGAATCATCGCCTTCTTCTCCCCAGTCACCCCAACAACAAGAGGCAATGAAAGTGAATTTGATCATGACGGACTACTGCATGCCAGGGATGAGTGGCTATGATTTACTTAAACGAGTCAAGGGATCTTCTTGGAAACACGTTCCAGTGGTGATCATGTCATCAGAGAATGAACCATCAAGAATCAGCATGTGCTTGGAAGGAGGAGCAGAGGAGTTTCTACTGAAGCCACTGAACTTATCAGACCTCAAGAAGCTTCAGCCGTACCTTGTGAAACCCGTGGATAAGAATAATAGTAACAATAATTCATCAAGAGCACAAGAATCTGGTAATAGTGATGTAGCAACCGACAGTGACTGCAATTCCAACAGTAAGAACAATTGTTTCGCCAAAAGGAAGGGTATGTCTCCTCAACCTTCTGACAGATCCAGACCCAAATTCAAAGGCTTGACGGTCGTGTAA 783 0.4432 MNCPNAREHNQKEKEERRRAWRITENSLTSTVKMEAKSDVEDSIKLQKEEDLHNFHVLAVDDSLIDRKLLEKLLQVSSCKVTSVDSGDKALKYLGLVDDLDNASSTSSESSPSSPQSPQQQEAMKVNLIMTDYCMPGMSGYDLLKRVKGSSWKHVPVVIMSSENEPSRISMCLEGGAEEFLLKPLNLSDLKKLQPYLVKPVDKNNSNNNSSRAQESGNSDVATDSDCNSNSKNNCFAKRKGMSPQPSDRSRPKFKGLTVV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1829 260 MobiDBLite consensus disorder prediction 200 260 - -
Lele27g1829 260 SMART REC_2 55 194 IPR001789 GO:0000160
Lele27g1829 260 CDD REC_typeA_ARR 57 193 - -
Lele27g1829 260 Pfam Response regulator receiver domain 119 192 IPR001789 GO:0000160
Lele27g1829 260 MobiDBLite consensus disorder prediction 1 20 - -
Lele27g1829 260 PANTHER TWO-COMPONENT RESPONSE REGULATOR 55 228 IPR045279 GO:0009736
Lele27g1829 260 MobiDBLite consensus disorder prediction 102 121 - -
Lele27g1829 260 ProSiteProfiles Response regulatory domain profile. 56 198 IPR001789 GO:0000160
Lele27g1829 260 MobiDBLite consensus disorder prediction 200 240 - -
Lele27g1829 260 Gene3D - 56 228 - -
Lele27g1829 260 SUPERFAMILY CheY-like 53 193 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1829 Lele-ChrLele27 23185834 23190297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1829 55 199 Response Regulator Gene Family AT2G41310 63.514 2.27e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele27g1829 Response_reg 4e-15 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0259 25 1534257 1536276 Lele27g1829 27 23185834 23190297 hybridization
Lele26g0269 26 1588862 1590848 Lele27g1829 27 23185834 23190297 hybridization