Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1814 ATGACGCATCTCGCCACCGATTCCCCCCTTTCTCGTAGCATAGTCCGTGCTTTCTTGGATTTCCTCAACTTAGTTGAACCGGCCCCTGGCGTTGATGTAGAAGGGCTTGAGGTTGCTAGGGAGTGTTTGACAGAGGTGTTTAAGCTTAACACATCTCCGACAGATGTTCATGTAAAATCTGTTTCTTTGGTCGACATATTCAAGTCCCTTGAGTCGAGCAAGCAATGTGAAGCTAGTCAGTCAGATGTTGGTAAACAACCAGATGACATGGATGCATCGGCTTCATTCACTGCTCACAATGCTGATCATACACACGAACATTCCGAGGATGAAGATTGGACTCAAGGGTCTCGCACATTTGGAGTTTCCAAAGATGAGCTGTGTGGGCAATTCTTTAATGCTCTGGAGAAAGTCCACTTCTTTAGGACAAATCCTGATGGAACTGATGACCCAGTGCAACTGGAGAAAGCATCTCGTATATTTAATGATGCTGTAATGGAGATGGAAAGATCTGAGTGTCAGGAGTTTAGTCTGACGAATTTGGCTGAATTGCTGAAATCACAAGGCAATAAAGCAATGCAATCCAATAAATACCCTGATGCAATTGATTTCTATAATTGTGCAATTGCACTTTGCGAAGGGAATGCTGTTTACTACTGCAACCGGGCCGCTGCTTACACTCAGATCCACAAATATGTAGAAGCAATCCAAGACTGTCTTAAATCTATTGAGATTGACCCAAACTATAGCAAGGCATACAGTCGACTGGGTTTAGCATATTATGCTCAGGGAAATTACAGAGATGCCATCGATAAAGGGTTTAGGAAAGCCTTGCTATTGGATCCAAGTAATGAATCAATTAAAGAAAATATACGGGTTGCTGGGCAAAAATTGATAGAAGAGCAACATCGTGCAGATCACAGTCAGAATTCAAGATCATCTCAGGAGTCTCAGAACCAGTCTGCACGAGGGTCAAGTGGAAATGCAGCTCCACCCCCATTCAACTCAATGCCATTTAATGCCAACGATCTTGCAAGCATGTTTATGAACATAGCCGCAAACACTGCCAATGCGTATCAAGGACAGCATCCCCAGGAAGGGCAAGGGGAAGATAGCAATACCAATTCATCTAACGAACCTGAAATAAGGATCGGGAGCAATATTAATTTGAACTTGAACCAAATGCCTGAGGATTTGACGGGGGCTTTCAGGTCTGTGATGGAAATGTTATCTGGAGCAGCGCCTCCAGGCGGCGGCCAACCACAAGATCACTTCAATGGAAGAACTGCGCCAAACTAG 1299 0.4426 MTHLATDSPLSRSIVRAFLDFLNLVEPAPGVDVEGLEVARECLTEVFKLNTSPTDVHVKSVSLVDIFKSLESSKQCEASQSDVGKQPDDMDASASFTAHNADHTHEHSEDEDWTQGSRTFGVSKDELCGQFFNALEKVHFFRTNPDGTDDPVQLEKASRIFNDAVMEMERSECQEFSLTNLAELLKSQGNKAMQSNKYPDAIDFYNCAIALCEGNAVYYCNRAAAYTQIHKYVEAIQDCLKSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFRKALLLDPSNESIKENIRVAGQKLIEEQHRADHSQNSRSSQESQNQSARGSSGNAAPPPFNSMPFNANDLASMFMNIAANTANAYQGQHPQEGQGEDSNTNSSNEPEIRIGSNINLNLNQMPEDLTGAFRSVMEMLSGAAPPGGGQPQDHFNGRTAPN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1814 432 MobiDBLite consensus disorder prediction 311 338 - -
Lele27g1814 432 MobiDBLite consensus disorder prediction 302 338 - -
Lele27g1814 432 Pfam Tetratricopeptide repeat 216 249 IPR001440 GO:0005515
Lele27g1814 432 SUPERFAMILY TPR-like 181 292 IPR011990 GO:0005515
Lele27g1814 432 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 177 328 - -
Lele27g1814 432 MobiDBLite consensus disorder prediction 360 389 - -
Lele27g1814 432 Gene3D Immunoglobulin FC, subunit C 5 74 - -
Lele27g1814 432 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
Lele27g1814 432 Gene3D Tetratricopeptide repeat domain 178 331 IPR011990 GO:0005515
Lele27g1814 432 SMART tpr_5 216 249 IPR019734 GO:0005515
Lele27g1814 432 SMART tpr_5 182 215 IPR019734 GO:0005515
Lele27g1814 432 SMART tpr_5 250 284 IPR019734 GO:0005515
Lele27g1814 432 MobiDBLite consensus disorder prediction 410 432 - -
Lele27g1814 432 PANTHER LD24721P 3 413 - -
Lele27g1814 432 ProSiteProfiles TPR repeat profile. 250 284 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1814 Lele-ChrLele27 23106544 23112785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1814 181 278 U-box Gene Family AT3G07370 32.653 6.35e-09 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0275 25 1620403 1626587 Lele27g1814 27 23106544 23112785 hybridization
Lele26g0285 26 1672810 1680860 Lele27g1814 27 23106544 23112785 hybridization