Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1803 ATGGCGGAGACCGTTCAATGGGAATGCTCAGACTGTTCGACCCTACCCTCCGACCTTCCGCTGACCAATAAGAAGACCTCGCAAAAGGGAGATGGGGATTTGATAGCTGCCATTCGAGCAGTTGAAGCAGATGGTTCTCTTACTGAGATGGAGAGGGCCAGGAAGCGCCAACGGCTCCTGTACGGAAAGGCCGTGTTGGAGGAGGACGACGACAAAGAGGAGAAGAAGGGAAAAGGAGAAGAGAAGGACGTTTTAGACATCCTCAACGGAACTCTGAGCTGTTCCTTCTGTTTGCAACTATTAGATAGGCCTGTCACGCATAACCCTTTGAGGGTAGCTGGCCAGACTCCGTGCGGGCACAATTTCTGCCTGAAATGCTTCCAGCAATGGAACCGGCAAGGCAACAATATGTGTGCGATGTGTCGTACGATGATCAATCACGACGTGGGAAGCGAACTTCGGATTAATTCTGCACTTGTAAATGCCATTCGTATGGCAAAAGCTTCGAAAGTGAATGTTGCAGGAGAAACTTCAAGAGTGTACCAATTTGTTCACAACCAAGATAGACCCGACACAGCATACACTACGGAGCGGGCCCAGAGGAACGGCAACGCAAATGCTGCAAGCGGGAAAATATTTGTAACAATACCTCAGGATCATTTTGGAGGTTATGTTGATGATGAGGATCATGGAGAGTGGTTTCTTTACACAGGAAGATCTCACAAGGAAAAAGGGTCCTCGTATGCCCCTCAACAAGGCATAAGATACGACGGCATTTACAGAATAGAAAAGTGCTGGCAGAAACAAGGAATGCAGAATCTTCAGGTTAACAGAGAATTGATGGGTCTAATTGACTCGTTGAAGGAAGAAGAGGCTGAAGAAAAAAGATATTTAGAAGACTTGAGGATCGGTGAGAATTCAAGTGGTGAAAAGGCGGACTCCATGGAAACCGGCATTGAGAAAGACGAAGAACTTGATTCAAATGAATGCTGCAGTGAGCAAAATGAGCCGGAGCTAGAGCTGTGA 1026 0.4727 MAETVQWECSDCSTLPSDLPLTNKKTSQKGDGDLIAAIRAVEADGSLTEMERARKRQRLLYGKAVLEEDDDKEEKKGKGEEKDVLDILNGTLSCSFCLQLLDRPVTHNPLRVAGQTPCGHNFCLKCFQQWNRQGNNMCAMCRTMINHDVGSELRINSALVNAIRMAKASKVNVAGETSRVYQFVHNQDRPDTAYTTERAQRNGNANAASGKIFVTIPQDHFGGYVDDEDHGEWFLYTGRSHKEKGSSYAPQQGIRYDGIYRIEKCWQKQGMQNLQVNRELMGLIDSLKEEEAEEKRYLEDLRIGENSSGEKADSMETGIEKDEELDSNECCSEQNEPELEL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1803 341 MobiDBLite consensus disorder prediction 294 318 - -
Lele27g1803 341 MobiDBLite consensus disorder prediction 319 341 - -
Lele27g1803 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 239 278 IPR045134 -
Lele27g1803 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 171 IPR013083 -
Lele27g1803 341 ProSiteProfiles Zinc finger RING-type profile. 94 142 IPR001841 -
Lele27g1803 341 SUPERFAMILY PUA domain-like 222 278 IPR015947 -
Lele27g1803 341 SUPERFAMILY RING/U-box 93 148 - -
Lele27g1803 341 Gene3D - 239 324 IPR036987 -
Lele27g1803 341 Pfam Ring finger domain 93 142 IPR001841 -
Lele27g1803 341 Pfam SAD/SRA domain 242 276 IPR003105 -
Lele27g1803 341 Coils Coil 273 293 - -
Lele27g1803 341 MobiDBLite consensus disorder prediction 294 341 - -
Lele27g1803 341 SMART G9a_1 166 275 IPR003105 -
Lele27g1803 341 SMART ring_2 94 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1803 Lele-ChrLele27 23031544 23034594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1803 2 285 C2H2 Transcription Factor Family AT5G39550 38.281 1.76e-73 237